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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0517600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.46 (0.0536) R2 : 0.523
β1 : 3.06 (0.2) R2dD : 0.276 R2D : 0.00313
β2 : 1.13 (0.134) R2dC : 0.0743 R2C : -0.0345
β3 : -2.84 (0.264) R2dE : 0.139 R2E : -0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.99 (0.118) R2dN8 : 0.439 R2N8 : 0.114
σ : 0.99
deviance : 451.45
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_____
C
peak time of C : 20.1
E
wheather : temperature
threshold : -12.42
memory length : 47
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
435.03 0.98 6.07 -1.28 1.33 1.62 2.29 -23.2 1.4 23.4 30.16 1411 -- --
449.09 0.995 5.46 3.07 1.01 -2.57 1.51 -- 1.97 20.9 -17.93 657 -- --
455.66 0.994 6.03 -0.925 1.33 1.56 -- -22.8 1.42 23 31.05 1487 -- --
451.45 0.99 5.46 3.06 1.13 -2.84 -- -- 1.99 20.1 -12.42 47 -- --
561.77 1.1 6.06 -1.49 -- 2.27 -- -29.4 1.43 -- 30.09 1598 -- --
514.23 1.06 5.54 2.6 1.28 -- 2.03 -- 1.62 23 -- -- -- --
531.07 1.08 5.54 2.52 1.28 -- -- -- 1.61 22.7 -- -- -- --
513.75 1.06 5.42 3.07 -- -2.87 -- -- 2 -- -7.606 10 -- --
679.46 1.21 5.57 -- 1.15 -1.35 -- -- 1.48 21.7 -6.926 38 -- --
631.36 1.17 5.51 2.55 -- -- -- -- 1.62 -- -- -- -- --
698.9 1.24 5.61 -- 1.29 -- -- -- 1.33 22.8 -- -- -- --
745.17 1.28 5.53 -- -- -1.56 -- -- 1.55 -- 19.6 19 -- --
802.62 1.32 5.57 -- -- -- -- -- 1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.56 wind 9.0 43200 > th dose dependent rect. 20 1
3 426.83 wind 7.0 43200 > th dose independent rect. 18 3
4 427.37 wind 9.0 43200 > th dose independent rect. 20 1
5 427.59 wind 7.0 43200 < th dose independent rect. 18 3
6 429.07 wind 9.0 43200 < th dose independent rect. 20 1
8 430.83 precipitation 0.1 43200 > th dose dependent rect. 17 1
10 431.61 precipitation 0.1 43200 < th dose independent rect. 17 1
11 431.61 precipitation 0.1 43200 < th dose dependent rect. 17 1
12 431.94 precipitation 0.1 43200 > th dose independent rect. 17 1
14 432.80 wind 7.0 43200 > th dose dependent rect. 17 4
16 433.12 temperature 30.0 1440 < th dose independent rect. 9 2
20 433.71 temperature 30.0 1440 > th dose dependent rect. 13 3
21 433.75 temperature 30.0 1440 > th dose dependent rect. 11 5
23 433.85 temperature 30.0 1440 < th dose independent rect. 3 8
26 433.99 temperature 30.0 1440 < th dose independent rect. 1 10
46 434.17 temperature 30.0 1440 > th dose independent rect. 9 2
68 434.58 wind 9.0 43200 > th dose independent rect. 17 7
71 434.65 temperature 30.0 1440 > th dose dependent sin 2 NA
79 434.83 wind 9.0 43200 > th dose independent rect. 17 11
90 435.01 temperature 30.0 1440 < th dose independent rect. 23 12
144 435.24 temperature 30.0 1440 > th dose dependent rect. 15 23
145 435.26 temperature 30.0 1440 > th dose dependent no NA NA
267 435.35 temperature 30.0 1440 < th dose independent rect. 19 16
282 435.66 temperature 30.0 1440 > th dose dependent rect. 13 23
286 435.72 wind 9.0 43200 < th dose independent rect. 17 11
326 435.97 wind 9.0 43200 > th dose dependent rect. 16 12
329 436.03 wind 9.0 43200 < th dose independent rect. 17 8
331 436.04 wind 9.0 43200 > th dose dependent rect. 16 9
348 436.39 temperature 30.0 1440 > th dose dependent rect. 10 1
403 436.94 humidity 50.0 14400 > th dose independent rect. 16 19
415 437.57 temperature 10.0 720 > th dose dependent rect. 13 20
416 437.59 temperature 30.0 1440 > th dose independent rect. 18 17
462 438.46 humidity 50.0 14400 < th dose independent rect. 15 20
466 438.70 atmosphere 1000.0 1440 > th dose independent rect. 23 2
467 438.85 humidity 50.0 14400 < th dose independent rect. 17 18
473 438.97 atmosphere 1000.0 1440 > th dose independent rect. 21 5
481 439.13 humidity 50.0 14400 > th dose independent rect. 17 17
508 439.45 temperature 15.0 10 > th dose dependent rect. 13 23
509 439.46 humidity 50.0 14400 < th dose independent sin 11 NA
510 439.53 temperature 10.0 270 > th dose dependent rect. 12 23
538 440.04 atmosphere 995.0 14400 > th dose independent rect. 12 7
540 440.06 atmosphere 1000.0 1440 < th dose independent rect. 22 4
542 440.07 atmosphere 1000.0 1440 < th dose independent rect. 23 2
584 440.50 atmosphere 1000.0 270 < th dose independent rect. 17 22
592 440.64 atmosphere 1000.0 1440 < th dose independent rect. 21 12
596 440.68 humidity 50.0 14400 > th dose independent sin 11 NA
611 440.88 temperature 30.0 1440 < th dose independent sin 10 NA
620 440.96 atmosphere 995.0 14400 > th dose independent rect. 15 4
621 440.96 atmosphere 995.0 14400 < th dose independent rect. 15 4
635 441.11 atmosphere 1000.0 1440 > th dose independent rect. 21 10
636 441.14 atmosphere 1000.0 1440 > th dose independent rect. 21 12
665 441.27 atmosphere 1000.0 1440 < th dose independent rect. 21 8
682 441.51 temperature 30.0 1440 > th dose independent rect. 15 21
697 441.67 temperature 30.0 1440 > th dose independent sin 10 NA
717 441.80 wind 7.0 43200 > th dose independent rect. 15 18
725 441.86 atmosphere 995.0 14400 < th dose independent rect. 17 2
767 442.11 temperature 30.0 1440 < th dose independent rect. 15 21
770 442.12 atmosphere 995.0 14400 < th dose dependent rect. 17 2
787 442.22 atmosphere 1000.0 270 < th dose independent rect. 12 22
893 442.75 wind 7.0 43200 < th dose independent rect. 15 18