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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0517400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calponin-like actin-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.035) R2 : 0.0242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.248 (0.0737) R2dN8 : 0.0313 R2N8 : 0.0242
σ : 0.659
deviance : 199.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.83 0.625 3.15 -0.769 0.391 0.544 -0.305 -0.863 0.02 9.48 1.001 10070 -- --
177.75 0.621 3.15 -0.593 0.399 0.687 -0.307 -- 0.024 9.61 1 10070 -- --
177.15 0.62 3.15 -0.781 0.383 0.55 -- -0.879 0.0196 9.44 1.03 10094 -- --
177.62 0.621 3.15 -0.609 0.41 0.71 -- -- 0.0501 9.55 0.81 10045 -- --
184.38 0.632 3.16 -0.766 -- 0.655 -- -0.907 0.0112 -- 1.18 10279 -- --
186.39 0.64 3.1 -0.387 0.382 -- -0.317 -- 0.203 9.41 -- -- -- --
186.76 0.64 3.1 -0.399 0.383 -- -- -- 0.202 9.41 -- -- -- --
184.87 0.633 3.15 -0.624 -- 0.8 -- -- 0.0503 -- 0.81 10290 -- --
185.9 0.635 3.12 -- 0.527 0.592 -- -- 0.124 9.55 1.5 9683 -- --
195.37 0.653 3.11 -0.401 -- -- -- -- 0.203 -- -- -- -- --
190.95 0.646 3.09 -- 0.384 -- -- -- 0.247 9.49 -- -- -- --
193.65 0.648 3.15 -- -- 0.586 -- -- 0.104 -- 1.481 10279 -- --
199.62 0.659 3.1 -- -- -- -- -- 0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.57 humidity 80.0 43200 > th dose independent rect. 7 6
3 169.90 humidity 80.0 43200 < th dose independent rect. 7 8
4 169.93 humidity 80.0 43200 > th dose independent rect. 6 11
6 169.96 humidity 80.0 43200 < th dose independent rect. 6 11
10 170.09 humidity 70.0 43200 > th dose dependent rect. 7 7
28 170.62 humidity 80.0 43200 > th dose independent rect. 6 14
30 170.63 humidity 80.0 43200 < th dose independent rect. 6 14
31 170.64 humidity 80.0 43200 > th dose independent rect. 8 4
37 170.72 humidity 70.0 43200 > th dose dependent rect. 9 3
60 170.99 humidity 80.0 43200 < th dose independent rect. 9 3
72 171.24 humidity 80.0 43200 < th dose independent sin 0 NA
77 171.32 humidity 80.0 43200 > th dose independent sin 0 NA
82 171.38 humidity 80.0 43200 > th dose independent rect. 9 2
96 171.61 humidity 50.0 4320 > th dose independent rect. 12 2
128 172.06 humidity 70.0 43200 > th dose dependent sin 0 NA
148 172.44 atmosphere 1000.0 30 < th dose dependent rect. 11 1
158 172.50 wind 7.0 43200 > th dose independent rect. 15 1
177 172.67 wind 7.0 43200 < th dose independent rect. 15 1
200 172.91 temperature 25.0 4320 < th dose independent rect. 8 1
207 173.03 humidity 80.0 43200 > th dose dependent rect. 14 3
223 173.14 temperature 25.0 4320 > th dose independent rect. 8 1
227 173.17 humidity 80.0 43200 > th dose independent rect. 15 1
228 173.17 humidity 70.0 43200 > th dose dependent rect. 15 1
231 173.21 radiation 1.0 14400 > th dose independent rect. 12 1
243 173.30 humidity 80.0 43200 > th dose independent rect. 11 1
277 173.47 radiation 1.0 14400 < th dose independent rect. 12 1
278 173.47 wind 3.0 43200 < th dose independent rect. 21 2
287 173.51 humidity 80.0 43200 > th dose independent rect. 14 3
358 173.85 radiation 1.0 14400 < th dose dependent rect. 12 2
361 173.86 wind 3.0 43200 > th dose independent rect. 21 2
364 173.87 humidity 80.0 43200 > th dose dependent rect. 7 2
385 173.93 atmosphere 1000.0 90 < th dose independent rect. 10 1
387 173.94 atmosphere 1000.0 10 < th dose independent rect. 11 1
414 173.99 humidity 80.0 43200 < th dose independent rect. 15 1
417 174.00 humidity 90.0 43200 > th dose independent rect. 7 1
430 174.02 temperature 25.0 4320 > th dose dependent rect. 7 3
444 174.06 temperature 30.0 30 < th dose independent rect. 9 23
445 174.06 wind 1.0 10 < th dose dependent rect. 11 2
459 174.10 temperature 30.0 4320 < th dose independent rect. 16 1
460 174.10 radiation 40.0 10 < th dose independent rect. 11 1
472 174.16 wind 3.0 43200 < th dose dependent rect. 21 2
502 174.24 humidity 80.0 43200 < th dose independent rect. 14 3
505 174.25 precipitation 0.1 43200 > th dose independent rect. 1 6
507 174.25 precipitation 0.1 43200 > th dose dependent rect. 1 6
519 174.28 precipitation 0.1 43200 < th dose independent rect. 1 6
521 174.28 precipitation 0.1 43200 < th dose dependent rect. 1 6
558 174.41 wind 1.0 1440 < th dose dependent rect. 24 1
567 174.45 humidity 90.0 43200 < th dose independent rect. 7 1
604 174.51 wind 7.0 43200 > th dose dependent rect. 14 21
609 174.52 wind 7.0 43200 > th dose dependent rect. 6 13
614 174.53 wind 9.0 43200 > th dose independent rect. 13 22
618 174.54 humidity 90.0 43200 > th dose independent rect. 17 1
625 174.54 wind 7.0 43200 > th dose dependent rect. 6 11
628 174.55 humidity 90.0 43200 < th dose independent rect. 17 1
637 174.56 wind 7.0 43200 > th dose dependent rect. 23 20
661 174.60 wind 9.0 43200 > th dose dependent sin 19 NA
670 174.61 wind 7.0 43200 > th dose dependent rect. 2 17
680 174.62 wind 9.0 43200 > th dose dependent rect. 9 11
689 174.63 wind 5.0 43200 > th dose dependent rect. 15 1
695 174.63 wind 7.0 43200 > th dose dependent rect. 23 18
705 174.65 temperature 30.0 4320 > th dose independent rect. 16 1
710 174.65 wind 1.0 1440 < th dose dependent rect. 5 1
712 174.65 wind 7.0 43200 > th dose dependent rect. 2 15
723 174.66 wind 9.0 43200 > th dose independent rect. 23 21
749 174.69 humidity 90.0 30 < th dose independent rect. 8 1
750 174.69 atmosphere 1005.0 30 > th dose independent rect. 8 1
777 174.70 wind 9.0 43200 > th dose dependent rect. 9 14
783 174.71 wind 9.0 43200 > th dose independent rect. 18 23
786 174.71 wind 9.0 43200 > th dose dependent rect. 9 16
805 174.73 wind 9.0 43200 > th dose dependent rect. 10 6
822 174.74 atmosphere 1005.0 30 > th dose dependent rect. 8 1
827 174.74 wind 9.0 43200 > th dose dependent rect. 10 22
845 174.77 wind 9.0 43200 > th dose independent rect. 6 14
858 174.78 temperature 10.0 1440 > th dose independent rect. 9 1
861 174.78 atmosphere 995.0 1440 > th dose independent rect. 9 1
864 174.78 atmosphere 1015.0 1440 < th dose independent rect. 9 1
872 174.78 wind 9.0 43200 > th dose independent rect. 1 19
874 174.78 temperature 10.0 1440 > th dose independent rect. 10 23
904 174.80 temperature 20.0 30 > th dose dependent rect. 8 1
914 174.81 radiation 30.0 30 < th dose independent rect. 8 1
920 174.81 wind 7.0 43200 > th dose dependent sin 2 NA
958 174.84 humidity 70.0 30 > th dose independent rect. 8 1
963 174.84 wind 9.0 43200 < th dose independent rect. 13 22
967 174.84 humidity 90.0 43200 > th dose dependent rect. 20 1
975 174.85 wind 9.0 43200 > th dose independent rect. 6 11
980 174.85 wind 9.0 43200 > th dose independent rect. 15 23