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Os07g0516600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.89 (0.0318) R2 : 0.604
β1 : -1.53 (0.12) R2dD : 0.156 R2D : 0.0816
β2 : 1.82 (0.0828) R2dC : 0.426 R2C : 0.382
β3 : 1.23 (0.101) R2dE : 0.147 R2E : 0.0113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.154 (0.069) R2dN8 : 0.00626 R2N8 : -0.0129
σ : 0.59
deviance : 160.72
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C
peak time of C : 17.5
E
wheather : temperature
threshold : 24.21
memory length : 1206
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.79 0.583 7.99 -2.47 1.82 1.54 -1.12 -3.78 -0.31 17.5 25.51 1265 -- --
157.72 0.585 7.89 -1.53 1.83 1.3 -1.25 -- -0.188 17.4 24.07 1153 -- --
156.58 0.583 7.99 -2.44 1.82 1.51 -- -3.68 -0.309 17.6 25.64 1283 -- --
160.72 0.59 7.89 -1.53 1.82 1.23 -- -- -0.154 17.5 24.21 1206 -- --
230.45 0.707 7.98 -2.37 -- 2.42 -- -3.76 -0.573 -- 22.19 443 -- --
209.01 0.678 7.85 -1.15 1.74 -- -0.996 -- 0.0238 17.9 -- -- -- --
211.21 0.681 7.86 -1.14 1.74 -- -- -- 0.0191 18 -- -- -- --
245.21 0.729 7.91 -1.66 -- 2.13 -- -- -0.369 -- 21.38 465 -- --
216.24 0.685 7.82 -- 1.88 0.834 -- -- 0.142 17.6 26.25 1231 -- --
367.47 0.896 7.83 -1.19 -- -- -- -- -0.0204 -- -- -- -- --
245.54 0.733 7.83 -- 1.75 -- -- -- 0.146 18 -- -- -- --
312.63 0.824 7.84 -- -- 1.77 -- -- -0.0856 -- 23.2 463 -- --
404.94 0.939 7.8 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.17 radiation 20 4320 < th dose dependent rect. 18 2
7 145.13 radiation 10 4320 < th dose dependent rect. 18 4
17 146.27 radiation 1 4320 > th dose dependent rect. 18 1
27 146.56 wind 5 43200 > th dose independent rect. 10 5
28 146.58 wind 3 43200 > th dose dependent rect. 11 3
30 146.75 wind 5 43200 < th dose independent rect. 9 6
34 146.94 wind 5 43200 > th dose dependent rect. 10 6
54 147.85 wind 5 43200 > th dose independent rect. 11 3
56 147.89 wind 5 43200 < th dose independent rect. 11 3
57 147.89 radiation 1 720 > th dose dependent rect. 18 11
66 148.29 wind 5 43200 < th dose independent rect. 8 8
67 148.29 wind 7 43200 < th dose dependent rect. 11 1
85 148.70 wind 5 43200 < th dose independent rect. 5 11
96 148.88 wind 5 43200 > th dose independent rect. 5 11
101 148.99 radiation 30 14400 < th dose independent rect. 16 4
121 149.29 radiation 20 14400 > th dose dependent rect. 16 15
129 149.39 temperature 25 720 > th dose dependent rect. 17 6
131 149.42 wind 7 43200 < th dose independent rect. 24 16
136 149.49 wind 7 43200 > th dose independent rect. 24 16
138 149.51 wind 5 43200 > th dose dependent rect. 5 11
188 149.93 wind 7 43200 < th dose independent sin 1 NA
219 150.21 wind 7 43200 > th dose independent sin 2 NA
240 150.38 radiation 1 4320 < th dose independent rect. 18 2
269 150.55 radiation 1 4320 < th dose independent rect. 18 4
293 150.77 wind 5 43200 > th dose dependent sin 0 NA
322 151.07 wind 5 43200 > th dose dependent rect. 24 17
329 151.14 humidity 90 43200 > th dose independent rect. 21 1
343 151.20 radiation 30 14400 > th dose dependent rect. 15 17
346 151.26 radiation 1 4320 < th dose independent rect. 18 11
373 151.39 humidity 90 43200 < th dose independent rect. 20 2
389 151.47 humidity 90 43200 > th dose dependent rect. 21 1
429 151.64 radiation 1 4320 > th dose independent rect. 18 11
455 151.76 humidity 90 43200 < th dose independent rect. 18 4
468 151.81 humidity 90 43200 < th dose independent rect. 17 8
490 151.89 wind 9 43200 < th dose dependent rect. 9 5
521 152.04 atmosphere 1005 43200 > th dose independent rect. 18 1
592 152.26 temperature 25 720 > th dose dependent rect. 17 15
599 152.31 atmosphere 1005 43200 > th dose independent rect. 16 1
610 152.37 humidity 90 43200 < th dose independent sin 16 NA
617 152.38 humidity 90 43200 < th dose independent rect. 16 20
620 152.40 atmosphere 1005 43200 < th dose independent rect. 18 1
654 152.53 radiation 1 4320 > th dose independent rect. 18 1
665 152.53 radiation 1 1440 < th dose dependent rect. 16 14
671 152.55 radiation 1 720 > th dose dependent rect. 18 1
718 152.69 atmosphere 1005 43200 > th dose independent rect. 16 3
722 152.70 humidity 90 43200 < th dose independent rect. 8 22
761 152.83 radiation 30 14400 < th dose independent rect. 15 17
816 153.00 humidity 90 43200 < th dose independent rect. 18 1
843 153.05 humidity 90 720 < th dose dependent rect. 17 6
865 153.11 radiation 1 1440 < th dose dependent sin 13 NA
883 153.18 humidity 90 43200 < th dose independent no NA NA
891 153.20 humidity 90 43200 > th dose independent rect. 16 19
905 153.22 humidity 90 43200 < th dose independent rect. 24 23
913 153.25 humidity 90 43200 < th dose independent rect. 11 16
917 153.25 humidity 90 43200 < th dose independent rect. 5 23
966 153.35 humidity 90 43200 < th dose independent rect. 2 23
990 153.41 wind 5 43200 > th dose dependent rect. 10 20