Os07g0516200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Endoribonuclease, L-PSP family.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0516200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Endoribonuclease, L-PSP family.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.79 | 0.338 | 8.91 | 0.567 | 0.835 | 1.14 | 0.426 | 0.937 | -0.224 | 19 | 24.9 | 166 | -- | -- |
| 52.13 | 0.336 | 8.92 | 0.466 | 0.809 | 1.23 | 0.469 | -- | -0.263 | 19 | 24.91 | 165 | -- | -- |
| 52.22 | 0.337 | 8.91 | 0.589 | 0.833 | 1.14 | -- | 1.21 | -0.214 | 19 | 24.93 | 165 | -- | -- |
| 52.74 | 0.338 | 8.92 | 0.436 | 0.806 | 1.26 | -- | -- | -0.255 | 19 | 24.92 | 184 | -- | -- |
| 72.04 | 0.395 | 8.92 | 0.255 | -- | 1.83 | -- | -0.238 | -0.342 | -- | 24.69 | 316 | -- | -- |
| 75.79 | 0.408 | 8.91 | 0.655 | 1.26 | -- | 1.08 | -- | -0.161 | 18 | -- | -- | -- | -- |
| 78.63 | 0.415 | 8.91 | 0.646 | 1.27 | -- | -- | -- | -0.157 | 18 | -- | -- | -- | -- |
| 71.88 | 0.395 | 8.92 | 0.328 | -- | 1.77 | -- | -- | -0.33 | -- | 24.7 | 340 | -- | -- |
| 57.55 | 0.353 | 8.94 | -- | 0.75 | 1.37 | -- | -- | -0.319 | 19.2 | 24.79 | 193 | -- | -- |
| 162.21 | 0.595 | 8.89 | 0.608 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 89.62 | 0.443 | 8.92 | -- | 1.26 | -- | -- | -- | -0.229 | 18 | -- | -- | -- | -- |
| 74.62 | 0.402 | 8.93 | -- | -- | 1.81 | -- | -- | -0.376 | -- | 24.61 | 345 | -- | -- |
| 171.97 | 0.612 | 8.9 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 8 | 49.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 7 |
| 12 | 49.96 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 45 | 51.00 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 49 | 51.07 | humidity | 60 | 720 | > th | dose dependent | sin | 1 | NA |
| 66 | 51.31 | humidity | 90 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 83 | 51.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 99 | 51.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 107 | 51.70 | humidity | 90 | 720 | < th | dose dependent | sin | 2 | NA |
| 108 | 51.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 121 | 51.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 136 | 51.86 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 9 |
| 151 | 51.93 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 10 |
| 155 | 51.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 208 | 52.06 | humidity | 60 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 238 | 52.14 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 274 | 52.26 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 284 | 52.28 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 550 | 52.92 | humidity | 80 | 720 | > th | dose independent | sin | 1 | NA |
| 567 | 52.95 | humidity | 80 | 720 | < th | dose independent | sin | 1 | NA |
| 646 | 53.12 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 890 | 53.64 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 17 |
| 966 | 53.81 | radiation | 40 | 720 | > th | dose independent | sin | 6 | NA |
| 998 | 53.86 | radiation | 40 | 720 | > th | dose independent | rect. | 14 | 23 |