Os07g0515100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-dependent protein kinase, isoform 2 (EC 2.7.1.-) (CDPK 2).
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Os07g0515100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-dependent protein kinase, isoform 2 (EC 2.7.1.-) (CDPK 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.79 | 0.277 | 11.9 | -0.639 | 1.16 | 0.833 | 0.612 | -0.859 | -0.25 | 20.3 | 20.58 | 585 | -- | -- |
| 36.6 | 0.282 | 11.9 | -0.472 | 1.16 | 0.902 | 0.3 | -- | -0.21 | 20.4 | 20.6 | 512 | -- | -- |
| 35.72 | 0.278 | 11.9 | -0.612 | 1.16 | 0.836 | -- | -0.663 | -0.236 | 20.3 | 20.5 | 528 | -- | -- |
| 36.87 | 0.283 | 11.9 | -0.483 | 1.15 | 0.914 | -- | -- | -0.213 | 20.4 | 20.6 | 511 | -- | -- |
| 94.09 | 0.452 | 11.9 | -0.52 | -- | 1.06 | -- | -0.252 | -0.326 | -- | 25.9 | 614 | -- | -- |
| 62.27 | 0.37 | 11.8 | -0.161 | 1.27 | -- | 0.374 | -- | -0.0147 | 20.3 | -- | -- | -- | -- |
| 62.7 | 0.371 | 11.8 | -0.173 | 1.27 | -- | -- | -- | -0.0146 | 20.3 | -- | -- | -- | -- |
| 91.29 | 0.445 | 11.9 | -0.504 | -- | 1.1 | -- | -- | -0.444 | -- | 25.22 | 604 | -- | -- |
| 42.45 | 0.303 | 11.8 | -- | 1.18 | 0.785 | -- | -- | -0.133 | 20.4 | 20.6 | 481 | -- | -- |
| 152.27 | 0.577 | 11.8 | -0.181 | -- | -- | -- | -- | -0.0285 | -- | -- | -- | -- | -- |
| 63.49 | 0.373 | 11.8 | -- | 1.27 | -- | -- | -- | 0.00465 | 20.3 | -- | -- | -- | -- |
| 97.67 | 0.46 | 11.9 | -- | -- | 1.02 | -- | -- | -0.362 | -- | 25.21 | 592 | -- | -- |
| 153.14 | 0.578 | 11.8 | -- | -- | -- | -- | -- | -0.00836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.39 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 2 | 35.40 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 9 | 35.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 20 | 35.93 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 18 |
| 34 | 36.04 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 36 | 36.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 38 | 36.10 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 57 | 36.23 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 21 |
| 58 | 36.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 66 | 36.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 74 | 36.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 86 | 36.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 102 | 36.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 111 | 36.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 134 | 36.46 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 179 | 36.52 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 196 | 36.56 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 224 | 36.61 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 249 | 36.65 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 250 | 36.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 338 | 36.85 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 434 | 37.06 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 467 | 37.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 468 | 37.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 488 | 37.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 557 | 37.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 618 | 37.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 635 | 37.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 662 | 37.49 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 665 | 37.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 678 | 37.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 754 | 37.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 802 | 37.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 935 | 37.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 977 | 37.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 993 | 38.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |