Os07g0515000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0515000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.48 | 0.303 | 10 | -0.886 | 0.28 | -0.995 | -0.277 | -0.547 | -0.164 | 15.8 | 29.45 | 98 | -- | -- |
| 41.75 | 0.301 | 10 | -0.984 | 0.285 | -0.987 | -0.0841 | -- | -0.187 | 16 | 29.5 | 99 | -- | -- |
| 41.63 | 0.301 | 10 | -0.893 | 0.283 | -0.989 | -- | -0.404 | -0.16 | 16 | 29.41 | 105 | -- | -- |
| 41.76 | 0.301 | 10 | -0.982 | 0.288 | -0.987 | -- | -- | -0.189 | 16.1 | 29.5 | 99 | -- | -- |
| 44.72 | 0.311 | 10 | -0.987 | -- | -1.24 | -- | -0.383 | -0.223 | -- | 29.7 | 123 | -- | -- |
| 54.78 | 0.347 | 10 | -0.736 | 0.601 | -- | 0.00247 | -- | 0.00967 | 15.5 | -- | -- | -- | -- |
| 54.78 | 0.347 | 10 | -0.736 | 0.601 | -- | -- | -- | 0.00969 | 15.5 | -- | -- | -- | -- |
| 44.9 | 0.312 | 10.1 | -1.05 | -- | -1.26 | -- | -- | -0.242 | -- | 29.93 | 109 | -- | -- |
| 64.33 | 0.376 | 10 | -- | 0.447 | -0.555 | -- | -- | -0.00416 | 16.1 | 29.5 | 99 | -- | -- |
| 74.98 | 0.405 | 10 | -0.762 | -- | -- | -- | -- | -0.00627 | -- | -- | -- | -- | -- |
| 69.07 | 0.389 | 9.98 | -- | 0.616 | -- | -- | -- | 0.0917 | 15.5 | -- | -- | -- | -- |
| 72.07 | 0.395 | 10 | -- | -- | -0.953 | -- | -- | -0.0622 | -- | 30.93 | 90 | -- | -- |
| 90.29 | 0.444 | 9.98 | -- | -- | -- | -- | -- | 0.0782 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 3 | 37.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 7 | 38.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 11 | 38.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 19 | 38.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 22 | 38.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 27 | 38.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 48 | 39.12 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 84 | 39.60 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 103 | 39.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 274 | 40.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 308 | 41.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 318 | 41.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 351 | 41.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 377 | 41.36 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 380 | 41.37 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 385 | 41.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 438 | 41.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 440 | 41.60 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 482 | 41.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 491 | 41.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 566 | 41.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 567 | 41.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 577 | 42.01 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 588 | 42.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 604 | 42.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 665 | 42.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 692 | 42.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 702 | 42.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 709 | 42.43 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 710 | 42.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 717 | 42.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 902 | 42.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 910 | 42.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 960 | 43.04 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |