FiT-DB / Search/ Help/ Sample detail

Os07g0513200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.65 (0.0232) R2 : 0.542
β1 : 0.89 (0.0852) R2dD : 0.114 R2D : 0.11
β2 : 1.23 (0.06) R2dC : 0.419 R2C : 0.41
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.123 (0.0497) R2dN8 : 0.00826 R2N8 : 0.0187
σ : 0.437
deviance : 87.2
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.17 0.407 5.51 2.03 1.27 -0.617 -0.0696 3.5 0.24 16.9 21.66 2079 -- --
80.49 0.418 5.61 1.23 1.21 -0.53 -0.0798 -- 0.0403 16.7 14.9 10384 -- --
75.18 0.404 5.51 2.04 1.27 -0.622 -- 3.54 0.242 16.9 21.82 2098 -- --
80.14 0.417 5.6 1.27 1.19 -0.657 -- -- 0.076 16.7 10.46 10123 -- --
146.9 0.568 5.66 0.76 -- 0.858 -- 0.502 -0.262 -- 22.45 2670 -- --
87.2 0.438 5.65 0.89 1.23 -- -0.015 -- -0.123 16.7 -- -- -- --
87.2 0.437 5.65 0.89 1.23 -- -- -- -0.123 16.7 -- -- -- --
146.57 0.566 5.67 0.682 -- 0.901 -- -- -0.285 -- 22.6 8447 -- --
105.45 0.481 5.67 -- 1.08 0.406 -- -- -0.24 17 25.43 2742 -- --
166.87 0.604 5.64 0.843 -- -- -- -- -0.155 -- -- -- -- --
108.06 0.486 5.67 -- 1.21 -- -- -- -0.222 16.7 -- -- -- --
152.37 0.577 5.67 -- -- 1.18 -- -- -0.292 -- 25.43 2742 -- --
185.62 0.636 5.66 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.27 temperature 20 270 > th dose dependent rect. 16 17
3 73.64 humidity 90 43200 < th dose independent rect. 2 17
16 73.78 humidity 90 43200 > th dose independent rect. 2 16
21 73.81 humidity 90 43200 > th dose independent rect. 2 19
37 73.93 humidity 90 43200 < th dose independent sin 3 NA
51 74.04 humidity 90 43200 > th dose independent sin 3 NA
65 74.07 humidity 80 43200 > th dose dependent rect. 3 16
70 74.09 humidity 90 43200 < th dose independent rect. 6 22
73 74.10 humidity 90 43200 > th dose independent rect. 6 21
83 74.12 humidity 90 43200 > th dose independent sin 18 NA
110 74.18 humidity 90 43200 < th dose independent sin 18 NA
116 74.18 humidity 80 43200 > th dose dependent sin 2 NA
120 74.19 humidity 90 43200 > th dose independent rect. 22 23
136 74.22 humidity 90 43200 > th dose independent rect. 13 10
137 74.22 humidity 90 43200 > th dose independent rect. 12 12
145 74.23 humidity 90 43200 > th dose independent rect. 11 14
155 74.24 humidity 90 43200 > th dose dependent rect. 3 21
160 74.25 humidity 90 43200 > th dose dependent rect. 8 18
162 74.26 humidity 90 43200 > th dose independent no NA NA
163 74.26 humidity 90 43200 < th dose independent no NA NA
175 74.27 humidity 90 43200 > th dose independent rect. 19 23
207 74.31 humidity 90 43200 < th dose independent rect. 15 23
208 74.31 humidity 90 43200 < th dose independent rect. 19 23
210 74.31 humidity 90 43200 > th dose dependent sin 18 NA
217 74.32 humidity 90 43200 > th dose independent rect. 15 23
238 74.35 humidity 90 43200 > th dose independent rect. 11 23
240 74.35 humidity 90 43200 > th dose independent rect. 17 23
264 74.37 humidity 90 43200 < th dose independent rect. 11 23
267 74.38 humidity 90 43200 < th dose independent rect. 13 10
284 74.40 humidity 90 43200 < th dose independent rect. 12 12
316 74.43 humidity 90 43200 > th dose dependent rect. 13 11
339 74.46 humidity 70 43200 > th dose dependent rect. 13 1
400 74.54 humidity 70 43200 > th dose dependent rect. 12 3
403 74.55 radiation 1 43200 > th dose independent rect. 5 3
404 74.55 radiation 1 43200 < th dose independent rect. 5 3
451 74.61 humidity 80 43200 < th dose independent rect. 13 1
468 74.63 radiation 1 43200 < th dose independent rect. 2 6
476 74.63 temperature 20 1440 > th dose dependent rect. 19 3
504 74.64 humidity 90 43200 > th dose dependent no NA NA
507 74.64 humidity 90 43200 > th dose dependent rect. 22 23
534 74.67 humidity 90 43200 > th dose dependent rect. 19 23
536 74.68 humidity 80 43200 < th dose independent rect. 9 7
543 74.68 temperature 20 1440 > th dose dependent rect. 20 1
545 74.68 humidity 90 43200 > th dose dependent rect. 4 7
549 74.68 humidity 90 43200 > th dose dependent rect. 14 23
593 74.72 humidity 80 43200 > th dose independent rect. 8 8
596 74.72 radiation 1 43200 < th dose dependent rect. 5 1
613 74.73 humidity 90 43200 > th dose dependent rect. 9 23
680 74.78 humidity 80 43200 > th dose independent rect. 13 3
767 74.84 radiation 1 43200 > th dose independent sin 10 NA
781 74.85 humidity 90 43200 > th dose independent rect. 17 4
784 74.85 humidity 80 43200 < th dose independent rect. 8 10
809 74.88 radiation 1 43200 < th dose independent sin 9 NA
843 74.90 humidity 80 43200 > th dose dependent rect. 13 7
855 74.91 humidity 90 43200 > th dose dependent rect. 20 1
888 74.94 humidity 90 43200 > th dose independent rect. 22 1
929 74.95 radiation 1 43200 > th dose independent rect. 17 21
946 74.96 radiation 1 43200 < th dose dependent rect. 2 4
960 74.97 humidity 90 43200 > th dose dependent rect. 22 1
977 74.98 radiation 1 43200 > th dose independent rect. 12 20
1000 74.99 temperature 20 720 > th dose dependent sin 13 NA