Os07g0511400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0511400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.92	(0.0301)	R²	:	0.321
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.52	(0.169)	R²_dE	:	0.325	R²_E	:	0.32
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0522	(0.0637)	R²_dN8	:	0.000574	R²_N8	:	-0.00418
σ	:	0.566
deviance	:	147.43
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	1.735
memory length	:	1214
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	10.4
open length of G	:	3.42

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
146.54	0.569	3.29	1.01	0.151	22.5	-0.634	45.3	0.068	2.08	0.995	1396	9.01	3.02
205.67	0.673	2.93	-0.449	0.175	1.53	-0.83	--	-0.0832	1.6	0.995	1396	9.01	3.02
148.01	0.567	3.3	1.05	0.155	22.8	--	45.8	0.0719	2.82	0.9903	1386	9.03	2.97
150	0.57	2.93	-0.0941	0.0504	2.2	--	--	-0.0971	1.8	1.68	1247	10.2	3.47
149.17	0.569	3.3	1.07	--	23	--	46.3	0.0721	--	1.001	1385	9.1	2.93
207.98	0.676	2.93	-0.467	0.165	--	-0.779	--	-0.0894	1.7	--	--	--	--
210.32	0.679	2.92	-0.443	0.171	--	--	--	-0.0855	2.48	--	--	--	--
147.63	0.566	2.93	0.0125	--	2.41	--	--	0.0228	--	1.68	1217	10.3	3.57
147.26	0.565	2.93	--	0.0619	2.39	--	--	0.0209	1.82	1.681	1214	10.3	3.5
212.04	0.68	2.92	-0.435	--	--	--	--	-0.0813	--	--	--	--	--
215.48	0.687	2.91	--	0.163	--	--	--	-0.0362	2.44	--	--	--	--
147.43	0.566	2.92	--	--	2.52	--	--	0.0522	--	1.735	1214	10.4	3.42
217.04	0.688	2.91	--	--	--	--	--	-0.033	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	147.35	radiation	1	1440	< th	dose independent	rect.	9	3
2	147.35	radiation	1	1440	< th	dose dependent	rect.	9	3
29	152.31	radiation	1	1440	> th	dose independent	rect.	9	5
30	152.42	radiation	1	1440	< th	dose independent	rect.	13	1
32	152.42	radiation	1	1440	< th	dose dependent	rect.	13	1
37	152.71	radiation	1	1440	> th	dose independent	rect.	13	1
62	154.10	radiation	1	1440	> th	dose independent	rect.	11	1
104	159.32	radiation	1	1440	> th	dose independent	rect.	9	1
125	163.10	humidity	90	720	> th	dose dependent	rect.	20	1
137	164.49	humidity	90	720	> th	dose dependent	rect.	20	3
149	164.51	radiation	1	1440	< th	dose independent	rect.	11	16
268	166.61	radiation	1	1440	< th	dose dependent	rect.	11	16
279	166.87	humidity	80	1440	> th	dose independent	rect.	11	2
326	167.67	radiation	1	1440	> th	dose independent	sin	20	NA
328	167.72	radiation	1	1440	< th	dose independent	sin	20	NA
346	168.12	humidity	80	1440	< th	dose independent	rect.	11	2
402	169.53	radiation	1	1440	< th	dose dependent	sin	20	NA
491	171.02	humidity	80	1440	> th	dose dependent	rect.	12	1
586	173.00	humidity	80	1440	< th	dose independent	rect.	9	5
727	175.29	humidity	90	720	> th	dose dependent	rect.	11	13
754	175.82	humidity	60	14400	> th	dose independent	rect.	20	12
766	176.02	humidity	60	14400	< th	dose independent	rect.	6	1
768	176.02	humidity	60	14400	< th	dose independent	rect.	20	1
770	176.02	radiation	20	14400	> th	dose independent	rect.	17	1
822	176.02	humidity	60	14400	< th	dose dependent	rect.	6	1
824	176.02	humidity	60	14400	< th	dose dependent	rect.	20	1
826	176.02	radiation	20	14400	> th	dose dependent	rect.	17	1
901	176.55	humidity	90	90	> th	dose dependent	rect.	6	20
914	176.73	humidity	60	14400	> th	dose independent	rect.	7	1
970	177.08	humidity	80	1440	< th	dose independent	rect.	3	12
980	177.14	radiation	1	1440	< th	dose dependent	rect.	1	16
993	177.20	radiation	1	1440	< th	dose dependent	rect.	19	22