Os07g0511300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eggshell protein family protein.
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Os07g0511300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eggshell protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.25 | 0.509 | 12.6 | -1.89 | 2.2 | 2.15 | 0.518 | -7.09 | -0.722 | 19.5 | 25.26 | 993 | -- | -- |
| 130.93 | 0.533 | 12.4 | -0.437 | 2.28 | 1.44 | -0.0296 | -- | -0.4 | 19.6 | 24.8 | 975 | -- | -- |
| 117.51 | 0.505 | 12.6 | -2.01 | 2.27 | 2.17 | -- | -7.86 | -0.654 | 19.6 | 26 | 1033 | -- | -- |
| 130.83 | 0.533 | 12.4 | -0.434 | 2.25 | 1.48 | -- | -- | -0.383 | 19.6 | 24.89 | 971 | -- | -- |
| 239.69 | 0.721 | 12.6 | -2.1 | -- | 3.85 | -- | -8.53 | -0.93 | -- | 24.5 | 648 | -- | -- |
| 189.4 | 0.645 | 12.4 | -0.0422 | 2.56 | -- | 0.132 | -- | -0.247 | 20 | -- | -- | -- | -- |
| 189.46 | 0.645 | 12.4 | -0.0459 | 2.56 | -- | -- | -- | -0.247 | 20 | -- | -- | -- | -- |
| 264.97 | 0.758 | 12.4 | -0.702 | -- | 3.16 | -- | -- | -0.595 | -- | 24.32 | 629 | -- | -- |
| 135.46 | 0.542 | 12.4 | -- | 2.26 | 1.41 | -- | -- | -0.324 | 19.6 | 24.9 | 942 | -- | -- |
| 547.63 | 1.09 | 12.3 | -0.0719 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 189.51 | 0.644 | 12.4 | -- | 2.56 | -- | -- | -- | -0.242 | 20 | -- | -- | -- | -- |
| 277.54 | 0.776 | 12.4 | -- | -- | 3.03 | -- | -- | -0.491 | -- | 24.4 | 626 | -- | -- |
| 547.76 | 1.09 | 12.3 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 15 | 121.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 28 | 121.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 31 | 122.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 34 | 122.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 36 | 122.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 67 | 122.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 76 | 122.80 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 77 | 122.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 78 | 122.81 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 110 | 123.04 | temperature | 20 | 270 | > th | dose dependent | sin | 16 | NA |
| 137 | 123.52 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 147 | 123.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 209 | 125.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 215 | 126.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 294 | 127.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 330 | 128.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 345 | 128.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 347 | 128.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 354 | 129.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 355 | 129.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 374 | 129.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 396 | 129.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 411 | 129.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 422 | 129.83 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 423 | 129.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 436 | 129.96 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 437 | 129.96 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 442 | 129.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 446 | 130.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 452 | 130.09 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 463 | 130.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 483 | 130.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 490 | 130.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 494 | 130.55 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 8 |
| 506 | 130.70 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 510 | 130.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 513 | 130.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 517 | 130.83 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 518 | 130.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 538 | 131.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 548 | 131.14 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 554 | 131.15 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 568 | 131.28 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 569 | 131.29 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 588 | 131.43 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 590 | 131.44 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 596 | 131.46 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 619 | 131.64 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 629 | 131.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 638 | 131.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 652 | 131.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 672 | 131.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 677 | 131.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 696 | 131.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 828 | 132.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 833 | 132.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 840 | 132.41 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 841 | 132.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 879 | 132.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 903 | 132.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 923 | 132.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 969 | 132.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |