Os07g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potassium transporter 7 (AtPOT7) (AtHAK7).
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Os07g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potassium transporter 7 (AtPOT7) (AtHAK7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.16 | 0.211 | 9.18 | 1.29 | 0.144 | 0.44 | -0.273 | -0.0419 | 0.032 | 19.3 | 38.33 | 991 | -- | -- |
| 20.16 | 0.209 | 9.18 | 1.28 | 0.142 | 0.436 | -0.27 | -- | 0.0297 | 19.2 | 46.5 | 999 | -- | -- |
| 20.29 | 0.21 | 9.19 | 1.27 | 0.158 | 0.43 | -- | 0.0638 | 0.0238 | 18.5 | 106.3 | 937 | -- | -- |
| 20.29 | 0.21 | 9.18 | 1.28 | 0.157 | 0.431 | -- | -- | 0.0271 | 18.5 | 118.7 | 948 | -- | -- |
| 20.99 | 0.213 | 9.18 | 1.31 | -- | 0.422 | -- | -0.138 | 0.0372 | -- | 130.3 | 1264 | -- | -- |
| 22.89 | 0.224 | 9.2 | 1.16 | 0.137 | -- | 0.159 | -- | -0.0438 | 15.8 | -- | -- | -- | -- |
| 22.92 | 0.224 | 9.2 | 1.16 | 0.143 | -- | -- | -- | -0.0429 | 16.5 | -- | -- | -- | -- |
| 21.01 | 0.213 | 9.18 | 1.28 | -- | 0.42 | -- | -- | 0.0292 | -- | 126 | 1254 | -- | -- |
| 57.47 | 0.353 | 9.24 | -- | 0.0706 | -0.3 | -- | -- | -0.208 | 19.6 | 187.3 | 16 | -- | -- |
| 24.01 | 0.229 | 9.2 | 1.15 | -- | -- | -- | -- | -0.0466 | -- | -- | -- | -- | -- |
| 58.42 | 0.358 | 9.23 | -- | 0.121 | -- | -- | -- | -0.172 | 16.7 | -- | -- | -- | -- |
| 57.71 | 0.354 | 9.23 | -- | -- | -0.31 | -- | -- | -0.21 | -- | 202 | 76 | -- | -- |
| 59.2 | 0.359 | 9.23 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 5 | 18.93 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 7 | 18.95 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 14 | 19.01 | temperature | 15.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 38 | 19.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 59 | 19.21 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 73 | 19.25 | temperature | 30.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 131 | 19.35 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 147 | 19.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 230 | 19.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 258 | 19.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 287 | 19.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 288 | 19.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 291 | 19.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 390 | 19.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 398 | 19.66 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 5 |
| 401 | 19.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 485 | 19.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 502 | 19.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 535 | 19.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 547 | 19.79 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 574 | 19.81 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 675 | 19.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 676 | 19.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 681 | 19.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 687 | 19.89 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 689 | 19.89 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 690 | 19.89 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 707 | 19.90 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 709 | 19.90 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 722 | 19.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 731 | 19.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 778 | 19.93 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 779 | 19.93 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 790 | 19.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 813 | 19.95 | wind | 7.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 815 | 19.95 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 817 | 19.95 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 827 | 19.95 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 829 | 19.96 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 830 | 19.96 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 832 | 19.96 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 863 | 19.97 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 9 |
| 864 | 19.97 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 928 | 19.99 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 929 | 19.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 930 | 19.99 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 957 | 19.99 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 962 | 20.00 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 967 | 20.00 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |