Os07g0507300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GCK-like kinase MIK.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0507300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to GCK-like kinase MIK.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.86 | 0.199 | 10 | 0.266 | 0.156 | 0.281 | -0.208 | -0.263 | 0.00298 | 5.73 | 0.3111 | 7110 | -- | -- |
| 17.96 | 0.197 | 10 | 0.218 | 0.174 | 0.293 | -0.196 | -- | -0.00214 | 5.8 | 0.3001 | 7117 | -- | -- |
| 17.96 | 0.197 | 10 | 0.264 | 0.155 | 0.281 | -- | -0.266 | 0.00364 | 5.75 | 0.33 | 7106 | -- | -- |
| 18.03 | 0.198 | 10 | 0.216 | 0.157 | 0.315 | -- | -- | -0.0129 | 5.63 | 0.3298 | 7109 | -- | -- |
| 18.69 | 0.201 | 10 | 0.276 | -- | 0.337 | -- | -0.187 | 0.0203 | -- | 0.3882 | 10750 | -- | -- |
| 19.78 | 0.209 | 10 | 0.113 | 0.162 | -- | -0.217 | -- | -0.057 | 6.17 | -- | -- | -- | -- |
| 19.9 | 0.209 | 10 | 0.111 | 0.161 | -- | -- | -- | -0.0562 | 6.25 | -- | -- | -- | -- |
| 18.27 | 0.199 | 10 | 0.203 | -- | 0.419 | -- | -- | 0.00648 | -- | 1.17 | 7885 | -- | -- |
| 19.14 | 0.204 | 10 | -- | 0.159 | 0.244 | -- | -- | -0.0214 | 5.63 | 1.633 | 7109 | -- | -- |
| 21.23 | 0.215 | 10 | 0.115 | -- | -- | -- | -- | -0.0527 | -- | -- | -- | -- | -- |
| 20.22 | 0.21 | 10 | -- | 0.162 | -- | -- | -- | -0.0685 | 6.21 | -- | -- | -- | -- |
| 19.36 | 0.205 | 10 | -- | -- | 0.333 | -- | -- | -0.0211 | -- | 1.757 | 6441 | -- | -- |
| 21.58 | 0.217 | 10 | -- | -- | -- | -- | -- | -0.0655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.18 | temperature | 20.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 3 | 17.21 | temperature | 10.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 7 | 17.27 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 15 | 17.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 16 | 17.35 | temperature | 30.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 19 | 17.37 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 34 | 17.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 37 | 17.46 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 41 | 17.47 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 50 | 17.48 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 56 | 17.50 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 72 | 17.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 76 | 17.52 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 101 | 17.54 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 120 | 17.56 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 126 | 17.57 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 155 | 17.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 177 | 17.60 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 230 | 17.62 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 242 | 17.63 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 255 | 17.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 256 | 17.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 305 | 17.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 321 | 17.67 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 327 | 17.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 351 | 17.69 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 426 | 17.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 427 | 17.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 439 | 17.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 466 | 17.73 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 566 | 17.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 620 | 17.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 12 |
| 642 | 17.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 3 |
| 656 | 17.80 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 686 | 17.81 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 766 | 17.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 13 |
| 779 | 17.83 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 799 | 17.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 814 | 17.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 854 | 17.85 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 855 | 17.85 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 862 | 17.85 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 863 | 17.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 887 | 17.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 888 | 17.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 920 | 17.87 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 933 | 17.87 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 957 | 17.88 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 963 | 17.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 966 | 17.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 972 | 17.88 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 974 | 17.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 984 | 17.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 7 |