Os07g0507000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os07g0507000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.57 | 0.445 | 11.1 | 0.2 | 0.715 | 1.04 | 1.17 | -1.04 | 0.454 | 20.4 | 18.34 | 10 | -- | -- |
| 92.78 | 0.449 | 11.1 | 0.21 | 0.749 | 0.995 | 0.137 | -- | 0.458 | 20.6 | 18.62 | 9 | -- | -- |
| 91.84 | 0.446 | 11.1 | 0.185 | 0.757 | 0.998 | -- | -0.423 | 0.451 | 20.6 | 19.23 | 9 | -- | -- |
| 92.86 | 0.449 | 11.1 | 0.196 | 0.77 | 0.983 | -- | -- | 0.452 | 20.7 | 19.98 | 9 | -- | -- |
| 110.32 | 0.489 | 11 | 0.213 | -- | 1.33 | -- | -0.463 | 0.468 | -- | 14.22 | 9 | -- | -- |
| 109.84 | 0.491 | 11.1 | 0.168 | 1.62 | -- | -0.0841 | -- | 0.441 | 22.6 | -- | -- | -- | -- |
| 109.87 | 0.491 | 11.1 | 0.171 | 1.62 | -- | -- | -- | 0.442 | 22.6 | -- | -- | -- | -- |
| 111.01 | 0.491 | 11 | 0.179 | -- | 1.33 | -- | -- | 0.459 | -- | 13.07 | 6 | -- | -- |
| 93.88 | 0.451 | 11.1 | -- | 0.772 | 0.981 | -- | -- | 0.433 | 20.7 | 20 | 9 | -- | -- |
| 271.11 | 0.769 | 11 | 0.2 | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
| 110.64 | 0.492 | 11.1 | -- | 1.62 | -- | -- | -- | 0.423 | 22.6 | -- | -- | -- | -- |
| 111.19 | 0.491 | 11.1 | -- | -- | 1.32 | -- | -- | 0.428 | -- | 12.93 | 4 | -- | -- |
| 272.17 | 0.77 | 11.1 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.35 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 5 | 84.88 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 6 | 84.99 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 9 | 85.09 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 20 | 85.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 22 | 85.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 32 | 85.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 69 | 86.48 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 87 | 86.69 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 102 | 86.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 126 | 87.28 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 133 | 87.52 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 145 | 87.63 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 14 |
| 154 | 87.69 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 21 |
| 160 | 87.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 164 | 87.79 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 9 |
| 173 | 87.84 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 199 | 88.01 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 216 | 88.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 225 | 88.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 226 | 88.14 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 242 | 88.21 | humidity | 60 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 265 | 88.34 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 267 | 88.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 280 | 88.38 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 315 | 88.50 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 15 |
| 352 | 88.64 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 384 | 88.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 388 | 88.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 404 | 88.89 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 13 |
| 444 | 89.04 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 16 |
| 484 | 89.20 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 539 | 89.42 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 592 | 89.59 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 19 |
| 599 | 89.61 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 631 | 89.72 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 666 | 89.80 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 684 | 89.87 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 701 | 89.91 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 704 | 89.92 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 23 | 10 |
| 730 | 89.98 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 747 | 90.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 754 | 90.05 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 782 | 90.11 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 785 | 90.12 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 8 |
| 875 | 90.30 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 919 | 90.40 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 926 | 90.41 | humidity | 60 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 951 | 90.48 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 952 | 90.49 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 9 |
| 981 | 90.55 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |