Os07g0502200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os07g0502200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.45 | 0.353 | 12.3 | 1.46 | 2.44 | -2.41 | 1.69 | 2.92 | 0.507 | 8.06 | 21.33 | 455 | -- | -- |
| 61.46 | 0.365 | 12.4 | 0.878 | 2.47 | -2.19 | 1.21 | -- | 0.362 | 7.99 | 21.18 | 455 | -- | -- |
| 63.82 | 0.372 | 12.4 | 1.27 | 2.43 | -2.36 | -- | 1.76 | 0.452 | 8.04 | 21.44 | 454 | -- | -- |
| 65.44 | 0.377 | 12.4 | 0.919 | 2.49 | -2.18 | -- | -- | 0.356 | 7.94 | 21.18 | 477 | -- | -- |
| 268.15 | 0.763 | 12.4 | 1.71 | -- | -4.19 | -- | 3.04 | 0.547 | -- | 24.13 | 559 | -- | -- |
| 149 | 0.572 | 12.5 | 0.376 | 3.27 | -- | 1.67 | -- | -0.0401 | 7.56 | -- | -- | -- | -- |
| 156.77 | 0.586 | 12.5 | 0.415 | 3.27 | -- | -- | -- | -0.0433 | 7.53 | -- | -- | -- | -- |
| 279.75 | 0.779 | 12.4 | 1.24 | -- | -3.96 | -- | -- | 0.422 | -- | 24.16 | 565 | -- | -- |
| 86.59 | 0.433 | 12.4 | -- | 2.54 | -1.98 | -- | -- | 0.243 | 7.81 | 21.53 | 502 | -- | -- |
| 729.2 | 1.26 | 12.5 | 0.464 | -- | -- | -- | -- | 0.00749 | -- | -- | -- | -- | -- |
| 161.31 | 0.594 | 12.5 | -- | 3.27 | -- | -- | -- | -0.0895 | 7.52 | -- | -- | -- | -- |
| 317.94 | 0.83 | 12.5 | -- | -- | -3.75 | -- | -- | 0.237 | -- | 24.34 | 558 | -- | -- |
| 734.86 | 1.27 | 12.6 | -- | -- | -- | -- | -- | -0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 2 | 54.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 11 | 55.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 24 | 56.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 31 | 56.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 43 | 57.57 | temperature | 20 | 720 | > th | dose dependent | sin | 1 | NA |
| 100 | 59.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 102 | 59.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 120 | 60.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 151 | 60.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 154 | 60.79 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 394 | 62.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 514 | 63.16 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 565 | 63.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 566 | 63.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 595 | 63.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 668 | 63.67 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |