Os07g0501900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0501900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.16 | 0.189 | 11.4 | -0.0146 | 1.3 | -0.409 | 0.207 | 0.359 | 0.141 | 6.54 | 20.58 | 2631 | -- | -- |
| 16.45 | 0.189 | 11.4 | -0.0869 | 1.3 | -0.441 | 0.264 | -- | 0.143 | 6.55 | 20.6 | 2630 | -- | -- |
| 16.27 | 0.188 | 11.4 | -0.0114 | 1.3 | -0.408 | -- | 0.368 | 0.14 | 6.55 | 20.55 | 2631 | -- | -- |
| 16.51 | 0.189 | 11.4 | -0.0703 | 1.3 | -0.472 | -- | -- | 0.127 | 6.54 | 20.3 | 2641 | -- | -- |
| 101.9 | 0.47 | 11.5 | 0.000381 | -- | -0.457 | -- | 0.306 | 0.157 | -- | 21 | 2078 | -- | -- |
| 21.2 | 0.216 | 11.5 | -0.334 | 1.29 | -- | 0.269 | -- | 5.66e-05 | 6.62 | -- | -- | -- | -- |
| 21.38 | 0.217 | 11.5 | -0.33 | 1.29 | -- | -- | -- | -0.00069 | 6.63 | -- | -- | -- | -- |
| 97.09 | 0.459 | 11.5 | -0.12 | -- | -0.505 | -- | -- | 0.172 | -- | 21.56 | 577 | -- | -- |
| 16.62 | 0.19 | 11.4 | -- | 1.3 | -0.507 | -- | -- | 0.141 | 6.54 | 20.47 | 2662 | -- | -- |
| 107.95 | 0.485 | 11.5 | -0.299 | -- | -- | -- | -- | 0.0253 | -- | -- | -- | -- | -- |
| 24.25 | 0.23 | 11.5 | -- | 1.28 | -- | -- | -- | 0.0361 | 6.64 | -- | -- | -- | -- |
| 65.28 | 0.376 | 11.6 | -- | -- | -0.682 | -- | -- | 0.0222 | -- | 26.3 | 372 | -- | -- |
| 110.31 | 0.49 | 11.5 | -- | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 10 | 15.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 15 | 15.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 18 | 15.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 66 | 16.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 76 | 16.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 77 | 16.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 88 | 16.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 153 | 16.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 164 | 16.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 191 | 16.40 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 192 | 16.40 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 210 | 16.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 318 | 16.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 410 | 16.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 488 | 16.69 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 566 | 16.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 590 | 16.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 591 | 16.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 608 | 16.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 627 | 16.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 697 | 16.78 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 720 | 16.79 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 749 | 16.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 857 | 16.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 859 | 16.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 882 | 16.85 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 883 | 16.85 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |