Os07g0501800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase.
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Os07g0501800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 323.67 | 0.845 | 2.66 | 10 | 0.404 | -11.8 | -0.00785 | 121 | -0.388 | 5.56 | 30.11 | 738 | 18 | 0.833 |
| 388.08 | 0.925 | 3.96 | -1.71 | 0.794 | 0.194 | 0.803 | -- | -0.529 | 5.18 | 30.11 | 738 | 18 | 0.833 |
| 323.67 | 0.838 | 2.66 | 10 | 0.404 | -11.8 | -- | 122 | -0.389 | 5.56 | 30.12 | 743 | 18 | 2.52 |
| 331.68 | 0.848 | 3.91 | -1.77 | 0.416 | 1.24 | -- | -- | -0.412 | 5.91 | 26.58 | 715 | 18.1 | 2.73 |
| 331.5 | 0.848 | 2.65 | 10.1 | -- | -11.8 | -- | 123 | -0.362 | -- | 30.09 | 770 | 18 | 4.99 |
| 388.16 | 0.924 | 3.96 | -1.71 | 0.789 | -- | 0.79 | -- | -0.53 | 5.17 | -- | -- | -- | -- |
| 389.72 | 0.924 | 3.96 | -1.71 | 0.793 | -- | -- | -- | -0.534 | 5.09 | -- | -- | -- | -- |
| 331.3 | 0.848 | 3.94 | -1.94 | -- | 1.65 | -- | -- | -0.382 | -- | 26.37 | 593 | 20 | 2.35 |
| 421.7 | 0.956 | 3.92 | -- | 0.344 | 1.23 | -- | -- | -0.325 | 5.51 | 26.12 | 660 | 19.9 | 2.47 |
| 422.7 | 0.961 | 3.97 | -1.68 | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
| 466.56 | 1.01 | 3.92 | -- | 0.763 | -- | -- | -- | -0.344 | 5.17 | -- | -- | -- | -- |
| 425.43 | 0.961 | 3.9 | -- | -- | 1.5 | -- | -- | -0.187 | -- | 26.28 | 579 | 20 | 2.57 |
| 497.08 | 1.04 | 3.92 | -- | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 324.64 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 326.06 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 16 | 327.28 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 17 | 327.61 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 48 | 329.81 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 70 | 332.52 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 71 | 332.59 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 72 | 332.91 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 83 | 332.93 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 87 | 333.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 125 | 334.63 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 151 | 336.18 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 170 | 336.76 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 175 | 337.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 187 | 338.37 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 14 |
| 199 | 338.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 201 | 338.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 202 | 338.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 208 | 339.06 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 214 | 339.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 215 | 339.77 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 232 | 340.13 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 246 | 340.30 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 290 | 341.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 295 | 341.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 336 | 342.54 | temperature | 20 | 10 | > th | dose independent | rect. | 4 | 2 |
| 365 | 343.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 366 | 343.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 371 | 343.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 372 | 343.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 374 | 343.42 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 8 |
| 383 | 343.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 404 | 343.67 | wind | 1 | 30 | < th | dose independent | rect. | 4 | 6 |
| 470 | 344.71 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 496 | 345.66 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 497 | 345.68 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 574 | 346.48 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 662 | 347.05 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 769 | 348.04 | humidity | 90 | 10 | > th | dose independent | rect. | 4 | 2 |
| 777 | 348.21 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 790 | 348.29 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 875 | 348.67 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 907 | 349.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 986 | 349.83 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 987 | 349.86 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |