Os07g0501700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os07g0501700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.19 | 0.339 | 9.68 | 1.04 | 0.615 | 0.751 | -0.466 | -3.03 | 0.221 | 6 | 25.1 | 4224 | -- | -- |
| 53.17 | 0.34 | 9.61 | 1.5 | 0.624 | 0.827 | -0.469 | -- | 0.283 | 5.74 | 20.7 | 5805 | -- | -- |
| 52.71 | 0.338 | 9.68 | 1.02 | 0.613 | 0.749 | -- | -3.08 | 0.221 | 5.93 | 25.18 | 4237 | -- | -- |
| 49.64 | 0.328 | 9.64 | 0.945 | 0.62 | 1.14 | -- | -- | 0.17 | 5.83 | 18.5 | 23113 | -- | -- |
| 72.07 | 0.395 | 9.69 | 1.04 | -- | 0.787 | -- | -2.99 | 0.22 | -- | 25 | 4266 | -- | -- |
| 66.87 | 0.383 | 9.55 | 2.07 | 0.639 | -- | -0.518 | -- | 0.553 | 5.65 | -- | -- | -- | -- |
| 67.52 | 0.385 | 9.55 | 2.07 | 0.636 | -- | -- | -- | 0.555 | 5.59 | -- | -- | -- | -- |
| 69.76 | 0.389 | 9.64 | 0.843 | -- | 1.29 | -- | -- | 0.2 | -- | 17.9 | 28696 | -- | -- |
| 52.77 | 0.338 | 9.69 | -- | 0.625 | 1.83 | -- | -- | -0.0913 | 5.74 | 18.1 | 47520 | -- | -- |
| 88.5 | 0.44 | 9.55 | 2.09 | -- | -- | -- | -- | 0.57 | -- | -- | -- | -- | -- |
| 179.92 | 0.627 | 9.6 | -- | 0.669 | -- | -- | -- | 0.325 | 5.46 | -- | -- | -- | -- |
| 73.05 | 0.398 | 9.7 | -- | -- | 1.85 | -- | -- | -0.0833 | -- | 18.07 | 47520 | -- | -- |
| 203.26 | 0.665 | 9.61 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 3 | 47.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 7 | 47.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 8 | 47.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 9 | 47.43 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 10 | 47.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 15 | 47.57 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 44 | 47.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 59 | 47.74 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 67 | 47.75 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 77 | 47.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 114 | 47.80 | atmosphere | 1000 | 43200 | > th | dose dependent | sin | 22 | NA |
| 137 | 47.81 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 142 | 47.81 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 154 | 47.81 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 21 | 17 |
| 211 | 47.83 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 223 | 47.83 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 21 | 14 |
| 253 | 47.84 | atmosphere | 1000 | 43200 | > th | dose dependent | no | NA | NA |
| 285 | 47.84 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 319 | 47.85 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 14 | 21 |
| 365 | 47.87 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 461 | 47.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 502 | 47.92 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 523 | 47.93 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 559 | 47.95 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 582 | 47.99 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 604 | 48.02 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 616 | 48.04 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 634 | 48.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 692 | 48.13 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 879 | 48.20 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 7 | 17 |
| 944 | 48.22 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 0 | NA |
| 997 | 48.23 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 5 | 18 |