Os07g0500300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os07g0500300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.18 | 0.385 | 12.9 | 0.189 | 0.66 | -2.36 | -0.0177 | -2.11 | 0.407 | 15.3 | 0.7806 | 1436 | -- | -- |
| 68.82 | 0.386 | 13 | -0.0217 | 0.542 | -2.02 | -0.0209 | -- | 0.376 | 16 | 0.7521 | 1468 | -- | -- |
| 66.73 | 0.38 | 13 | 0.144 | 0.566 | -2.47 | -- | -2.15 | 0.421 | 16.2 | 0.6993 | 1462 | -- | -- |
| 68.7 | 0.386 | 13 | -0.0475 | 0.537 | -2.06 | -- | -- | 0.364 | 16.3 | 0.83 | 1475 | -- | -- |
| 74.18 | 0.401 | 13 | 0.107 | -- | -2.34 | -- | -1.56 | 0.349 | -- | 0.8176 | 3063 | -- | -- |
| 109.7 | 0.491 | 12.9 | 0.452 | 0.63 | -- | -0.261 | -- | 0.628 | 15.3 | -- | -- | -- | -- |
| 109.91 | 0.491 | 12.9 | 0.447 | 0.63 | -- | -- | -- | 0.626 | 15.3 | -- | -- | -- | -- |
| 72.1 | 0.395 | 13 | 0.0401 | -- | -2.16 | -- | -- | 0.34 | -- | 1.293 | 3108 | -- | -- |
| 68.69 | 0.386 | 13 | -- | 0.541 | -2.04 | -- | -- | 0.374 | 16.4 | 0.86 | 1478 | -- | -- |
| 132.29 | 0.537 | 12.9 | 0.421 | -- | -- | -- | -- | 0.61 | -- | -- | -- | -- | -- |
| 115.19 | 0.502 | 12.9 | -- | 0.621 | -- | -- | -- | 0.577 | 15.3 | -- | -- | -- | -- |
| 72.14 | 0.396 | 13 | -- | -- | -2.18 | -- | -- | 0.334 | -- | 1.247 | 3104 | -- | -- |
| 136.96 | 0.546 | 12.9 | -- | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 4 | 63.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 8 | 63.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 10 | 64.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 28 | 64.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 29 | 64.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 31 | 64.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 45 | 64.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 48 | 64.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 63 | 64.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 68 | 65.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 89 | 65.15 | radiation | 1 | 1440 | < th | dose dependent | sin | 18 | NA |
| 125 | 65.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 155 | 65.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 172 | 65.84 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 189 | 65.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 252 | 66.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 256 | 66.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 263 | 66.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 269 | 66.47 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 273 | 66.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 452 | 67.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 455 | 67.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 478 | 67.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 480 | 67.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 485 | 67.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 488 | 67.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 493 | 67.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 496 | 67.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 497 | 67.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 505 | 67.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 507 | 67.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 511 | 67.62 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 517 | 67.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 518 | 67.63 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 521 | 67.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 557 | 67.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 571 | 67.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 577 | 67.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 580 | 67.82 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 607 | 67.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 625 | 67.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 631 | 67.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 635 | 67.96 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 638 | 67.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 644 | 67.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 648 | 67.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 663 | 67.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 725 | 68.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 727 | 68.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 19 |
| 763 | 68.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 781 | 68.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 783 | 68.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 845 | 68.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 870 | 68.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 908 | 68.43 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 969 | 68.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 972 | 68.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 996 | 68.53 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |