Os07g0499500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0499500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 7 precursor (EC 1.11.1.7) (Atperox P7) (ATP30).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.31	(0.0177)	R²	:	0.00418
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0516	(0.0373)	R²_dN8	:	0.0054	R²_N8	:	0.00418
σ	:	0.333
deviance	:	51.03
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
45.27	0.316	3.3	0.213	0.201	-0.69	-0.0969	7.65	-0.0291	7.11	0.4755	9	--	--
45.24	0.313	3.31	0.19	0.204	1.53	-0.0697	--	-0.028	7.14	0.2477	2	--	--
45.28	0.313	3.3	0.214	0.201	-1.1	--	9.07	-0.0287	7.26	0.4753	9	--	--
45.25	0.313	3.3	0.193	0.201	1.5	--	--	-0.0278	7.27	0.2513	2	--	--
47.38	0.321	3.3	0.22	--	-1.15	--	9.43	-0.0251	--	0.5041	7	--	--
47.53	0.323	3.31	0.212	0.208	--	-0.0611	--	-0.0317	7.02	--	--	--	--
47.54	0.323	3.3	0.211	0.207	--	--	--	-0.0315	7.08	--	--	--	--
47.37	0.321	3.31	0.197	--	1.56	--	--	-0.0249	--	0.414	2	--	--
46.2	0.317	3.31	--	0.203	1.56	--	--	-0.0488	7.23	0.05492	2	--	--
49.81	0.33	3.31	0.215	--	--	--	--	-0.0277	--	--	--	--	--
48.71	0.326	3.31	--	0.21	--	--	--	-0.055	7.02	--	--	--	--
48.38	0.324	3.31	--	--	1.62	--	--	-0.0462	--	0.3042	2	--	--
51.03	0.333	3.31	--	--	--	--	--	-0.0516	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	42.53	precipitation	0.1	10	< th	dose independent	rect.	3	23
2	42.53	precipitation	0.1	10	< th	dose dependent	rect.	3	23
3	42.68	atmosphere	1000.0	30	> th	dose independent	rect.	3	23
4	42.68	atmosphere	1005.0	10	> th	dose dependent	rect.	2	2
14	43.58	humidity	80.0	14400	< th	dose dependent	rect.	2	7
21	43.68	temperature	25.0	90	> th	dose independent	rect.	1	1
25	43.78	radiation	1.0	43200	< th	dose dependent	rect.	3	1
26	43.83	temperature	25.0	90	> th	dose dependent	rect.	1	3
35	43.96	radiation	1.0	4320	< th	dose dependent	rect.	3	1
37	43.97	atmosphere	1010.0	30	< th	dose dependent	rect.	2	1
41	43.99	wind	3.0	14400	> th	dose independent	rect.	10	1
45	44.02	wind	5.0	14400	< th	dose dependent	rect.	10	2
46	44.03	humidity	90.0	90	< th	dose independent	rect.	2	3
51	44.04	wind	3.0	30	< th	dose independent	rect.	2	1
54	44.04	wind	9.0	1440	< th	dose independent	rect.	3	1
55	44.04	temperature	10.0	1440	> th	dose independent	rect.	3	1
58	44.04	temperature	30.0	1440	< th	dose independent	rect.	3	1
62	44.04	humidity	50.0	1440	> th	dose independent	rect.	3	1
71	44.04	atmosphere	995.0	1440	> th	dose independent	rect.	3	1
72	44.04	radiation	1.0	1440	< th	dose independent	rect.	3	1
93	44.04	temperature	10.0	1440	> th	dose independent	rect.	4	23
110	44.05	wind	5.0	30	< th	dose dependent	rect.	2	1
113	44.05	temperature	10.0	30	> th	dose dependent	rect.	2	1
117	44.06	temperature	10.0	30	> th	dose independent	rect.	2	1
120	44.06	temperature	30.0	30	< th	dose independent	rect.	2	1
121	44.06	humidity	50.0	30	> th	dose independent	rect.	2	1
124	44.06	humidity	90.0	30	> th	dose independent	rect.	2	1
125	44.06	atmosphere	995.0	30	> th	dose independent	rect.	2	1
126	44.06	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
128	44.06	radiation	1.0	30	< th	dose independent	rect.	2	1
133	44.06	precipitation	0.1	30	< th	dose independent	rect.	2	1
134	44.06	temperature	10.0	30	> th	dose independent	rect.	3	23
136	44.06	humidity	50.0	30	> th	dose dependent	rect.	2	1
142	44.06	radiation	1.0	30	< th	dose dependent	rect.	2	1
147	44.06	precipitation	0.1	30	< th	dose dependent	rect.	2	1
148	44.07	wind	1.0	30	> th	dose independent	rect.	2	1
153	44.08	temperature	30.0	30	< th	dose dependent	rect.	2	1
161	44.10	atmosphere	995.0	720	> th	dose independent	rect.	23	16
181	44.17	wind	3.0	14400	< th	dose independent	rect.	10	1
219	44.22	humidity	90.0	720	< th	dose independent	rect.	1	3
228	44.29	wind	9.0	30	< th	dose independent	rect.	3	23
231	44.31	humidity	70.0	14400	> th	dose independent	rect.	8	1
248	44.45	wind	1.0	14400	> th	dose dependent	rect.	11	1
249	44.46	precipitation	0.1	10	< th	dose independent	rect.	21	23
251	44.46	precipitation	0.1	10	< th	dose dependent	rect.	21	23
253	44.49	humidity	70.0	14400	< th	dose independent	rect.	8	1
258	44.52	humidity	50.0	30	> th	dose independent	rect.	3	23
266	44.56	atmosphere	1000.0	10	> th	dose independent	rect.	21	23
270	44.59	humidity	70.0	14400	> th	dose independent	rect.	4	5
271	44.59	humidity	70.0	14400	> th	dose independent	rect.	24	9
319	44.70	wind	5.0	14400	< th	dose independent	rect.	10	5
322	44.72	humidity	70.0	14400	< th	dose independent	rect.	20	14
324	44.73	humidity	70.0	14400	< th	dose independent	rect.	7	3
341	44.77	wind	3.0	14400	> th	dose dependent	rect.	10	5
347	44.79	wind	5.0	14400	> th	dose independent	rect.	10	5
377	44.81	precipitation	0.1	14400	> th	dose independent	rect.	1	8
379	44.81	temperature	25.0	720	> th	dose dependent	rect.	6	2
382	44.82	wind	1.0	14400	< th	dose dependent	rect.	6	1
384	44.82	temperature	25.0	720	> th	dose dependent	rect.	3	5
390	44.83	atmosphere	995.0	720	> th	dose independent	rect.	7	8
398	44.84	humidity	90.0	90	< th	dose dependent	rect.	2	1
403	44.85	precipitation	0.1	14400	< th	dose independent	rect.	1	8
408	44.85	precipitation	0.1	14400	< th	dose dependent	rect.	1	8
437	44.89	temperature	10.0	720	> th	dose independent	rect.	15	8
438	44.89	temperature	10.0	720	> th	dose independent	rect.	23	16
453	44.91	precipitation	0.1	14400	> th	dose dependent	rect.	1	8
495	44.97	humidity	90.0	90	< th	dose dependent	rect.	2	3
511	44.99	temperature	10.0	720	> th	dose independent	rect.	3	8
512	44.99	atmosphere	995.0	720	> th	dose independent	rect.	3	8
514	44.99	temperature	10.0	720	> th	dose independent	rect.	11	16
527	45.00	atmosphere	1000.0	10	> th	dose independent	rect.	14	12
528	45.00	temperature	30.0	1440	< th	dose independent	rect.	14	21
529	45.00	precipitation	0.1	10	< th	dose independent	rect.	11	23
532	45.00	precipitation	0.1	10	< th	dose dependent	rect.	11	23
536	45.01	temperature	30.0	1440	> th	dose independent	rect.	14	21
566	45.05	humidity	90.0	10	< th	dose dependent	rect.	3	2
586	45.09	radiation	40.0	10	< th	dose independent	rect.	3	23
595	45.10	humidity	80.0	90	< th	dose dependent	rect.	24	3
597	45.10	wind	1.0	14400	< th	dose dependent	rect.	4	4
598	45.10	humidity	90.0	90	< th	dose dependent	rect.	2	5
601	45.11	wind	1.0	14400	< th	dose independent	rect.	6	1
607	45.11	wind	9.0	720	< th	dose independent	rect.	15	8
641	45.13	wind	9.0	720	< th	dose independent	rect.	3	8
647	45.13	temperature	30.0	1440	> th	dose dependent	rect.	15	1
662	45.14	humidity	90.0	720	< th	dose dependent	rect.	24	4
665	45.14	temperature	25.0	30	> th	dose dependent	rect.	16	19
666	45.15	humidity	90.0	720	> th	dose independent	rect.	3	1
676	45.15	wind	3.0	30	< th	dose dependent	rect.	2	6
679	45.16	atmosphere	1000.0	10	> th	dose independent	rect.	16	10
681	45.16	temperature	25.0	30	> th	dose dependent	rect.	24	11
683	45.17	wind	3.0	10	> th	dose independent	rect.	4	1
689	45.17	wind	3.0	10	> th	dose dependent	rect.	4	1
694	45.18	precipitation	0.1	10	< th	dose independent	sin	7	NA
699	45.18	temperature	30.0	1440	< th	dose independent	rect.	15	14
705	45.18	precipitation	0.1	10	< th	dose dependent	sin	7	NA
712	45.19	wind	3.0	14400	> th	dose independent	rect.	19	1
714	45.19	temperature	30.0	1440	< th	dose independent	rect.	15	7
720	45.20	wind	1.0	14400	< th	dose independent	rect.	4	4
721	45.20	temperature	30.0	1440	> th	dose independent	rect.	15	4
775	45.21	wind	1.0	14400	< th	dose dependent	rect.	2	6
780	45.22	temperature	30.0	1440	< th	dose independent	rect.	15	4
797	45.23	temperature	30.0	1440	< th	dose independent	sin	12	NA
830	45.24	precipitation	0.1	30	> th	dose dependent	rect.	22	7
834	45.24	temperature	25.0	30	> th	dose dependent	rect.	14	21
835	45.25	temperature	30.0	1440	> th	dose independent	rect.	15	2
843	45.25	wind	9.0	14400	> th	dose dependent	rect.	13	1
844	45.25	precipitation	0.1	90	> th	dose dependent	rect.	3	1
855	45.26	wind	3.0	14400	< th	dose independent	rect.	19	1
877	45.27	precipitation	0.1	10	> th	dose independent	rect.	3	1
906	45.28	humidity	50.0	14400	> th	dose independent	rect.	15	1
923	45.28	humidity	60.0	14400	< th	dose dependent	rect.	12	1
955	45.29	wind	1.0	14400	> th	dose independent	rect.	4	4
957	45.29	precipitation	0.1	10	> th	dose independent	rect.	23	6
965	45.29	wind	1.0	14400	< th	dose dependent	rect.	2	1