Os07g0498800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calreticulin interacted protein.
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Os07g0498800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calreticulin interacted protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.48 | 0.218 | 9.38 | 0.45 | 0.323 | -0.503 | -0.597 | -0.43 | 0.101 | 5.71 | 17.44 | 10 | -- | -- |
| 22.08 | 0.219 | 9.39 | 0.446 | 0.304 | -0.546 | -0.667 | -- | 0.0876 | 4.68 | 16.56 | 9 | -- | -- |
| 22.3 | 0.22 | 9.38 | 0.45 | 0.324 | -0.456 | -- | -0.439 | 0.103 | 6.48 | 16.87 | 9 | -- | -- |
| 23.35 | 0.225 | 9.38 | 0.462 | 0.32 | -0.471 | -- | -- | 0.105 | 6.32 | 17.31 | 9 | -- | -- |
| 27.33 | 0.243 | 9.39 | 0.469 | -- | -0.478 | -- | -0.412 | 0.111 | -- | 11.53 | 6 | -- | -- |
| 26.46 | 0.241 | 9.37 | 0.458 | 0.616 | -- | 0.444 | -- | 0.114 | 10.1 | -- | -- | -- | -- |
| 27.19 | 0.244 | 9.37 | 0.474 | 0.617 | -- | -- | -- | 0.114 | 9.87 | -- | -- | -- | -- |
| 28.18 | 0.247 | 9.39 | 0.479 | -- | -0.486 | -- | -- | 0.115 | -- | 12.59 | 4 | -- | -- |
| 28.97 | 0.251 | 9.39 | -- | 0.325 | -0.495 | -- | -- | 0.0554 | 5.99 | 18.16 | 9 | -- | -- |
| 49.98 | 0.33 | 9.39 | 0.468 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 33.11 | 0.269 | 9.38 | -- | 0.616 | -- | -- | -- | 0.061 | 9.81 | -- | -- | -- | -- |
| 34.21 | 0.272 | 9.4 | -- | -- | -0.492 | -- | -- | 0.0614 | -- | 14.92 | 4 | -- | -- |
| 55.75 | 0.348 | 9.4 | -- | -- | -- | -- | -- | 0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.48 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 20 |
| 6 | 20.75 | radiation | 20 | 10 | < th | dose dependent | sin | 6 | NA |
| 13 | 20.94 | radiation | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 25 | 21.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 30 | 21.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 37 | 21.16 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 65 | 21.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 105 | 21.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 132 | 21.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 161 | 21.50 | radiation | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 164 | 21.51 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 172 | 21.52 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 215 | 21.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 235 | 21.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 246 | 21.60 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 255 | 21.62 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 12 |
| 260 | 21.63 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 268 | 21.63 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 292 | 21.66 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 294 | 21.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 298 | 21.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 324 | 21.68 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 326 | 21.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 337 | 21.70 | radiation | 10 | 90 | < th | dose independent | sin | 8 | NA |
| 354 | 21.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 407 | 21.74 | temperature | 15 | 720 | > th | dose dependent | sin | 22 | NA |
| 462 | 21.77 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 480 | 21.78 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 483 | 21.78 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 485 | 21.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 498 | 21.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 500 | 21.78 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 528 | 21.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 616 | 21.85 | wind | 1 | 270 | > th | dose independent | rect. | 9 | 10 |
| 702 | 21.89 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 726 | 21.90 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 740 | 21.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 886 | 21.97 | temperature | 15 | 10 | > th | dose dependent | sin | 15 | NA |
| 887 | 21.97 | temperature | 15 | 270 | > th | dose dependent | sin | 17 | NA |
| 893 | 21.97 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 921 | 21.99 | radiation | 10 | 10 | < th | dose independent | sin | 7 | NA |
| 949 | 22.00 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 10 |