Os07g0498400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0498400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 302.11 | 0.817 | 8.9 | -0.981 | 3.29 | -1.65 | 1.06 | 1.99 | -0.0189 | 22.9 | 20.4 | 128 | 5.43 | -- |
| 306.53 | 0.815 | 8.86 | -0.929 | 3.27 | -1.98 | 1.53 | -- | 0.0542 | 23 | 19.2 | 115 | 5.53 | -- |
| 305.72 | 0.814 | 8.9 | -1.06 | 3.29 | -1.66 | -- | 2.48 | -0.0515 | 22.9 | 20.4 | 127 | 5.82 | -- |
| 313.71 | 0.825 | 8.87 | -1.01 | 3.29 | -2.21 | -- | -- | 0.0126 | 22.9 | 19.2 | 142 | 6.31 | -- |
| 585.99 | 1.13 | 8.87 | -2.37 | -- | -3.33 | -- | 3.29 | -0.313 | -- | 25.22 | 993 | 5.76 | -- |
| 380.97 | 0.915 | 8.82 | -0.473 | 2.95 | -- | 2.21 | -- | 0.258 | 22.7 | -- | -- | -- | -- |
| 401.09 | 0.938 | 8.82 | -0.56 | 2.94 | -- | -- | -- | 0.253 | 22.6 | -- | -- | -- | -- |
| 494.78 | 1.04 | 8.82 | -0.593 | -- | -4 | -- | -- | -0.171 | -- | 26.2 | 991 | 5.32 | -- |
| 339.34 | 0.858 | 8.86 | -- | 3.27 | -1.96 | -- | -- | 0.0933 | 23 | 19.2 | 106 | 5.72 | -- |
| 933.6 | 1.43 | 8.75 | -0.505 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 409.36 | 0.946 | 8.81 | -- | 2.94 | -- | -- | -- | 0.316 | 22.6 | -- | -- | -- | -- |
| 409.29 | 0.942 | 8.73 | -- | -- | -2.92 | -- | -- | 0.318 | -- | 34.2 | 944 | 3.26 | -- |
| 940.33 | 1.43 | 8.73 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.61 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 11 |
| 2 | 300.00 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 5 | 303.21 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 15 |
| 6 | 303.38 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 12 | 304.91 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 14 |
| 15 | 305.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 42 | 307.59 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 10 |
| 46 | 307.80 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 68 | 308.62 | temperature | 20 | 90 | > th | dose independent | sin | 14 | NA |
| 89 | 309.59 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 143 | 311.31 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 7 |
| 287 | 314.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 331 | 315.06 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 359 | 315.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 417 | 316.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 420 | 316.19 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 449 | 316.60 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 5 |
| 570 | 318.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 752 | 320.21 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 8 |
| 766 | 320.44 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 6 |
| 902 | 322.18 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 23 |
| 905 | 322.22 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |