Os07g0498300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0498300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.08 | 0.235 | 12.8 | -0.514 | 0.287 | -0.411 | -0.182 | 0.792 | -0.158 | 23.2 | 22.3 | 1531 | -- | -- |
| 26.21 | 0.238 | 12.8 | -0.443 | 0.294 | -0.68 | -0.0562 | -- | -0.0778 | 23.2 | 18.5 | 4835 | -- | -- |
| 25.22 | 0.234 | 12.8 | -0.514 | 0.288 | -0.411 | -- | 0.8 | -0.159 | 23.3 | 22.4 | 1575 | -- | -- |
| 26.19 | 0.238 | 12.8 | -0.486 | 0.297 | -0.73 | -- | -- | -0.105 | 23.2 | 18.5 | 4840 | -- | -- |
| 28.52 | 0.249 | 12.8 | -0.453 | -- | -0.428 | -- | 0.694 | -0.149 | -- | 22.34 | 916 | -- | -- |
| 33.04 | 0.269 | 12.7 | -0.102 | 0.295 | -- | -0.207 | -- | 0.0489 | 23.3 | -- | -- | -- | -- |
| 33.22 | 0.27 | 12.7 | -0.094 | 0.295 | -- | -- | -- | 0.0496 | 23.4 | -- | -- | -- | -- |
| 30.12 | 0.256 | 12.8 | -0.227 | -- | -0.429 | -- | -- | -0.0948 | -- | 22.4 | 922 | -- | -- |
| 28.11 | 0.247 | 12.7 | -- | 0.261 | -0.351 | -- | -- | -0.0485 | 23 | 22.36 | 1225 | -- | -- |
| 38.69 | 0.291 | 12.7 | -0.0864 | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
| 33.45 | 0.271 | 12.7 | -- | 0.295 | -- | -- | -- | 0.06 | 23.3 | -- | -- | -- | -- |
| 31.37 | 0.261 | 12.7 | -- | -- | -0.388 | -- | -- | -0.0577 | -- | 22.4 | 903 | -- | -- |
| 38.89 | 0.291 | 12.7 | -- | -- | -- | -- | -- | 0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 25.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 6 | 25.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 37 | 25.19 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 78 | 25.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 115 | 25.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 129 | 25.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 138 | 25.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 143 | 25.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 163 | 25.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 164 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 165 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 183 | 25.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 205 | 25.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 209 | 25.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 229 | 25.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 230 | 25.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 258 | 25.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 284 | 25.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 286 | 25.41 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 308 | 25.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 327 | 25.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 332 | 25.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 354 | 25.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 478 | 25.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 508 | 25.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 540 | 25.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 594 | 25.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 658 | 25.53 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 704 | 25.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 705 | 25.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 706 | 25.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 761 | 25.55 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 817 | 25.56 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 916 | 25.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 925 | 25.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 978 | 25.59 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 980 | 25.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |