Os07g0497100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5).
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Os07g0497100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chromodomain helicase-DNA-binding protein 5 (CHD-5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.65 | 0.303 | 12.1 | 1.73 | 0.205 | 0.148 | -0.323 | 3.14 | 0.206 | 8.18 | 9.847 | 4655 | -- | -- |
| 49.56 | 0.328 | 12.2 | 0.975 | 0.26 | 0.151 | -0.495 | -- | 0.0662 | 7.97 | 30.1 | 4085 | -- | -- |
| 41.89 | 0.301 | 12.1 | 1.72 | 0.208 | 0.159 | -- | 3.18 | 0.208 | 8.6 | 9.724 | 4830 | -- | -- |
| 46.62 | 0.318 | 12.2 | 0.643 | 0.207 | 0.403 | -- | -- | -0.149 | 8.66 | 31.26 | 47520 | -- | -- |
| 44.29 | 0.31 | 12.1 | 1.72 | -- | 0.138 | -- | 3.12 | 0.21 | -- | 10.1 | 4720 | -- | -- |
| 50.63 | 0.334 | 12.2 | 1.02 | 0.2 | -- | -0.318 | -- | 0.0135 | 8.09 | -- | -- | -- | -- |
| 50.91 | 0.334 | 12.2 | 1.01 | 0.2 | -- | -- | -- | 0.0142 | 8.48 | -- | -- | -- | -- |
| 48.98 | 0.326 | 12.2 | 0.63 | -- | 0.399 | -- | -- | -0.146 | -- | 31.2 | 47520 | -- | -- |
| 50.51 | 0.331 | 12.3 | -- | 0.211 | 0.755 | -- | -- | -0.391 | 8.8 | 25.5 | 47520 | -- | -- |
| 53.14 | 0.341 | 12.2 | 1.02 | -- | -- | -- | -- | 0.0161 | -- | -- | -- | -- | -- |
| 78.04 | 0.413 | 12.2 | -- | 0.205 | -- | -- | -- | -0.0988 | 8.11 | -- | -- | -- | -- |
| 53.03 | 0.339 | 12.3 | -- | -- | 0.762 | -- | -- | -0.393 | -- | 23.9 | 47520 | -- | -- |
| 80.34 | 0.418 | 12.2 | -- | -- | -- | -- | -- | -0.0965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.72 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 37 | 40.92 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 54 | 40.94 | temperature | 25 | 43200 | < th | dose dependent | sin | 15 | NA |
| 112 | 40.98 | temperature | 25 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 183 | 41.01 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 207 | 41.01 | temperature | 25 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 273 | 41.04 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 295 | 41.05 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 296 | 41.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 314 | 41.06 | temperature | 20 | 43200 | > th | dose independent | sin | 7 | NA |
| 318 | 41.06 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 325 | 41.06 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 359 | 41.07 | temperature | 25 | 43200 | < th | dose dependent | sin | 5 | NA |
| 365 | 41.07 | temperature | 25 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 393 | 41.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 420 | 41.09 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 421 | 41.09 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 468 | 41.10 | temperature | 20 | 43200 | < th | dose independent | sin | 7 | NA |
| 470 | 41.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 475 | 41.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 485 | 41.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 522 | 41.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 558 | 41.11 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 580 | 41.11 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 586 | 41.11 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 589 | 41.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 607 | 41.12 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 608 | 41.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 627 | 41.12 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 664 | 41.12 | temperature | 10 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 680 | 41.13 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 683 | 41.13 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 684 | 41.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 686 | 41.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 694 | 41.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 728 | 41.13 | temperature | 10 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 752 | 41.14 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 760 | 41.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 932 | 41.16 | temperature | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 962 | 41.17 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |