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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0496700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphate-induced protein 1 conserved region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0306) R2 : 0.819
β1 : 0.936 (0.112) R2dD : 0.0283 R2D : -0.0154
β2 : 3.96 (0.0898) R2dC : 1.12 R2C : 0.435
β3 : -2.63 (0.114) R2dE : 0.31 R2E : -0.373
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.754 (0.0655) R2dN8 : 0.0707 R2N8 : 0.0231
σ : 0.573
deviance : 151.38
__
_____
C
peak time of C : 14.1
E
wheather : radiation
threshold : 0.03001
memory length : 315
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.18
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.44 0.551 3.86 0.844 3.99 -2.67 2.48 -2.24 0.74 14 0.0321 307 4.03 --
144.61 0.56 3.89 0.913 3.92 -2.55 1.6 -- 0.736 14.2 0.03045 306 4.13 --
151.35 0.573 3.86 0.936 3.99 -2.7 -- -0.256 0.752 14.1 0.04 315 4.17 --
151.38 0.573 3.86 0.936 3.96 -2.63 -- -- 0.754 14.1 0.03001 315 4.18 --
233.93 0.712 3.88 0.794 -- -3.16 -- -1.46 0.688 -- -13.73 400 5.61 --
233.93 0.717 3.91 0.809 3.17 -- 1.46 -- 0.69 15.7 -- -- -- --
240.33 0.726 3.9 0.831 3.17 -- -- -- 0.698 15.7 -- -- -- --
240.33 0.722 3.88 0.831 -- -3.17 -- -- 0.698 -- -13.97 410 5.7 --
174.37 0.615 3.87 -- 3.96 -2.67 -- -- 0.67 14.2 0.03 326 4.3 --
798.21 1.32 3.9 0.699 -- -- -- -- 0.613 -- -- -- -- --
258.54 0.752 3.93 -- 3.16 -- -- -- 0.605 15.7 -- -- -- --
258.54 0.749 3.9 -- -- -3.15 -- -- 0.605 -- -21.27 315 4.91 --
811.1 1.33 3.92 -- -- -- -- -- 0.536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.13 precipitation 0.1 270 < th dose independent rect. 9 8
2 128.13 precipitation 0.1 270 < th dose dependent rect. 9 8
3 128.14 precipitation 0.1 270 < th dose independent rect. 11 16
4 128.14 precipitation 0.1 270 < th dose dependent rect. 11 16
5 128.28 temperature 10.0 270 > th dose dependent rect. 10 6
6 128.42 humidity 50.0 270 > th dose independent rect. 17 16
7 128.45 temperature 10.0 270 > th dose independent rect. 15 8
8 128.45 temperature 10.0 270 > th dose independent rect. 23 16
9 128.79 wind 9.0 270 < th dose independent rect. 17 16
10 128.81 radiation 30.0 270 < th dose independent rect. 15 8
11 128.82 temperature 10.0 270 > th dose independent rect. 9 8
12 128.82 atmosphere 1015.0 270 < th dose independent rect. 9 8
13 128.82 temperature 10.0 270 > th dose independent rect. 17 16
14 128.92 wind 9.0 270 < th dose independent rect. 23 16
15 128.97 temperature 15.0 270 > th dose independent rect. 3 8
16 129.02 wind 9.0 270 < th dose independent rect. 16 18
17 129.06 wind 9.0 270 < th dose independent rect. 15 8
19 129.17 temperature 20.0 270 > th dose independent rect. 10 7
20 129.19 precipitation 0.1 270 < th dose independent rect. 10 6
21 129.19 precipitation 0.1 270 < th dose dependent rect. 10 6
22 129.24 wind 9.0 270 < th dose independent rect. 10 6
23 129.32 temperature 10.0 270 > th dose independent rect. 10 6
24 129.32 atmosphere 1015.0 270 < th dose independent rect. 10 6
25 129.32 temperature 10.0 270 > th dose independent rect. 16 18
28 129.54 wind 9.0 270 < th dose independent rect. 9 8
29 129.68 atmosphere 995.0 270 > th dose independent rect. 23 16
31 130.19 precipitation 0.1 270 < th dose independent rect. 23 16
32 130.19 precipitation 0.1 270 < th dose dependent rect. 23 16
33 130.20 radiation 1.0 270 > th dose independent rect. 10 7
37 130.42 humidity 50.0 270 > th dose independent rect. 16 18
39 130.67 humidity 50.0 270 > th dose independent rect. 3 8
43 130.82 atmosphere 995.0 270 > th dose independent rect. 3 8
44 130.82 atmosphere 1015.0 270 < th dose independent rect. 3 8
45 130.82 temperature 10.0 270 > th dose independent rect. 11 16
46 130.86 radiation 1.0 270 < th dose dependent rect. 21 17
47 131.05 wind 9.0 270 < th dose independent rect. 3 8
48 131.07 atmosphere 1015.0 270 < th dose independent rect. 23 16
49 131.08 precipitation 0.1 270 < th dose independent rect. 3 8
50 131.08 precipitation 0.1 270 < th dose dependent rect. 3 8
51 131.31 radiation 1.0 270 < th dose dependent rect. 21 9
53 131.47 wind 1.0 270 > th dose independent rect. 10 6
55 131.79 temperature 15.0 270 > th dose independent rect. 5 16
56 131.81 atmosphere 995.0 270 > th dose independent rect. 17 16
57 132.04 wind 9.0 270 < th dose independent rect. 11 16
60 132.59 atmosphere 995.0 270 > th dose independent rect. 10 6
62 132.79 radiation 1.0 270 < th dose independent rect. 21 9
64 132.87 temperature 10.0 270 > th dose independent rect. 21 8
65 132.87 temperature 30.0 270 < th dose independent rect. 21 8
66 132.87 humidity 50.0 270 > th dose independent rect. 21 8
69 132.87 atmosphere 995.0 270 > th dose independent rect. 21 8
70 132.87 radiation 20.0 270 < th dose independent rect. 21 8
74 132.88 wind 9.0 270 < th dose independent rect. 21 8
76 132.91 radiation 40.0 270 < th dose dependent rect. 21 8
90 133.82 wind 1.0 270 > th dose independent rect. 9 8
92 133.89 radiation 40.0 270 < th dose independent rect. 17 16
100 134.39 precipitation 0.1 270 < th dose independent rect. 21 8
101 134.39 precipitation 0.1 270 < th dose dependent rect. 21 8
102 134.43 wind 9.0 270 < th dose independent rect. 5 16
110 134.94 atmosphere 1015.0 270 < th dose independent rect. 5 16
114 135.08 wind 1.0 270 > th dose independent rect. 15 8
120 135.74 radiation 40.0 270 < th dose dependent rect. 15 7
136 136.62 radiation 1.0 270 < th dose independent rect. 21 17
141 137.12 precipitation 0.1 270 < th dose independent rect. 16 18
142 137.12 precipitation 0.1 270 < th dose dependent rect. 16 18
147 137.51 humidity 90.0 270 < th dose independent rect. 10 7
156 137.95 precipitation 0.1 270 < th dose independent rect. 17 16
157 137.95 precipitation 0.1 270 < th dose dependent rect. 17 16
172 139.14 temperature 20.0 270 > th dose independent rect. 11 4
187 139.79 precipitation 0.1 270 < th dose independent rect. 15 8
189 139.79 precipitation 0.1 270 < th dose dependent rect. 15 8
196 140.12 atmosphere 995.0 270 > th dose independent rect. 15 8
206 140.66 precipitation 0.1 270 < th dose independent rect. 11 4
207 140.66 precipitation 0.1 270 < th dose dependent rect. 11 4
211 140.87 temperature 10.0 270 > th dose independent rect. 11 4
212 140.87 atmosphere 1015.0 270 < th dose independent rect. 11 4
213 140.87 temperature 10.0 270 > th dose independent rect. 15 20
216 141.10 wind 9.0 270 < th dose independent rect. 11 4
220 141.28 wind 9.0 270 < th dose independent rect. 15 20
240 141.71 atmosphere 995.0 270 > th dose independent rect. 11 4
243 141.92 precipitation 0.1 270 < th dose independent rect. 5 16
244 141.92 precipitation 0.1 270 < th dose dependent rect. 5 16
298 143.39 wind 1.0 270 > th dose independent rect. 11 4
306 143.59 temperature 30.0 270 < th dose independent rect. 4 6
328 144.01 radiation 1.0 270 > th dose independent rect. 11 4
355 144.52 atmosphere 1015.0 270 < th dose independent rect. 15 8
356 144.53 temperature 30.0 270 < th dose independent rect. 17 16
367 145.01 humidity 50.0 270 > th dose dependent rect. 21 8
369 145.07 humidity 90.0 270 < th dose independent rect. 11 4
371 145.19 humidity 50.0 270 > th dose independent rect. 23 16
379 145.50 humidity 50.0 270 > th dose independent rect. 10 6
388 145.97 atmosphere 995.0 270 > th dose independent rect. 16 6
391 146.06 radiation 1.0 270 < th dose dependent sin 10 NA
425 147.23 atmosphere 995.0 270 > th dose independent rect. 5 16
426 147.26 humidity 50.0 270 > th dose independent rect. 15 8
430 147.32 atmosphere 995.0 270 > th dose independent rect. 11 17
438 147.70 wind 1.0 270 > th dose independent rect. 4 6
439 147.76 temperature 30.0 270 < th dose independent rect. 16 18
449 148.11 atmosphere 1015.0 270 < th dose independent rect. 16 6
452 148.20 radiation 40.0 270 < th dose independent rect. 4 6
477 148.69 humidity 50.0 270 > th dose independent rect. 11 4
482 148.79 humidity 50.0 270 > th dose independent rect. 16 6
486 148.89 precipitation 0.1 270 < th dose independent rect. 16 6
487 148.89 precipitation 0.1 270 < th dose dependent rect. 16 6
490 148.91 wind 1.0 270 > th dose independent rect. 16 18
501 149.23 precipitation 0.1 270 < th dose independent rect. 15 20
502 149.23 precipitation 0.1 270 < th dose dependent rect. 15 20
505 149.38 atmosphere 1015.0 270 < th dose independent rect. 21 8
510 149.62 humidity 50.0 270 > th dose dependent rect. 5 5
568 151.02 atmosphere 1015.0 270 < th dose independent rect. 16 18
579 151.08 radiation 1.0 270 > th dose independent rect. 18 16
583 151.20 radiation 1.0 270 > th dose independent sin 10 NA
586 151.31 radiation 1.0 270 < th dose independent sin 10 NA
595 151.42 wind 1.0 10 > th dose independent rect. 6 6
598 151.43 wind 9.0 10 < th dose independent rect. 6 6
602 151.49 wind 9.0 10 < th dose independent rect. 12 18
606 151.57 precipitation 0.1 10 < th dose independent rect. 6 6
608 151.57 precipitation 0.1 10 < th dose dependent rect. 6 6
609 151.59 temperature 10.0 10 > th dose independent rect. 6 6
611 151.59 atmosphere 995.0 10 > th dose independent rect. 6 6
612 151.59 atmosphere 1015.0 10 < th dose independent rect. 6 6
613 151.59 temperature 10.0 10 > th dose independent rect. 12 18
637 151.88 wind 1.0 270 > th dose independent rect. 5 16
638 151.93 radiation 1.0 270 > th dose independent rect. 4 6
684 152.54 precipitation 0.1 10 < th dose independent rect. 12 18
685 152.54 precipitation 0.1 10 < th dose dependent rect. 12 18
702 152.76 radiation 1.0 90 > th dose independent rect. 18 18
703 152.79 wind 9.0 270 < th dose dependent rect. 5 5
714 152.93 wind 9.0 270 < th dose dependent rect. 21 8
717 153.01 radiation 40.0 270 < th dose dependent rect. 16 17
776 153.34 radiation 1.0 10 > th dose independent rect. 6 6
833 154.13 wind 1.0 270 > th dose independent rect. 11 16
855 154.61 wind 9.0 270 < th dose dependent rect. 4 7
925 155.36 atmosphere 1015.0 270 < th dose independent rect. 10 18
947 155.56 temperature 10.0 270 > th dose dependent rect. 10 17
971 155.86 wind 1.0 270 > th dose independent rect. 10 18
984 156.06 wind 9.0 270 < th dose dependent rect. 15 7
994 156.20 temperature 10.0 10 > th dose dependent rect. 12 18