Os07g0496200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME).
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Os07g0496200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.57 | 0.167 | 11.6 | 0.231 | 0.0994 | -0.777 | 0.447 | -0.152 | 0.283 | 8.32 | 20.49 | 114 | -- | -- |
| 12.55 | 0.165 | 11.6 | 0.25 | 0.0895 | -0.768 | 0.434 | -- | 0.283 | 8.03 | 21.24 | 120 | -- | -- |
| 13.16 | 0.169 | 11.6 | 0.245 | 0.0887 | -0.776 | -- | -0.177 | 0.282 | 7.14 | 20.07 | 140 | -- | -- |
| 13.1 | 0.169 | 11.6 | 0.246 | 0.0829 | -0.745 | -- | -- | 0.274 | 6.46 | 21.57 | 149 | -- | -- |
| 13.28 | 0.17 | 11.6 | 0.262 | -- | -0.789 | -- | -0.0374 | 0.282 | -- | 21.93 | 178 | -- | -- |
| 22.29 | 0.221 | 11.7 | 0.0996 | 0.359 | -- | 0.377 | -- | 0.16 | 4.67 | -- | -- | -- | -- |
| 22.63 | 0.223 | 11.7 | 0.0971 | 0.361 | -- | -- | -- | 0.158 | 4.42 | -- | -- | -- | -- |
| 13.28 | 0.17 | 11.6 | 0.268 | -- | -0.792 | -- | -- | 0.285 | -- | 21.94 | 177 | -- | -- |
| 14.73 | 0.179 | 11.6 | -- | 0.104 | -0.671 | -- | -- | 0.237 | 5.84 | 22.18 | 144 | -- | -- |
| 29.6 | 0.254 | 11.7 | 0.111 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 22.88 | 0.224 | 11.7 | -- | 0.362 | -- | -- | -- | 0.147 | 4.42 | -- | -- | -- | -- |
| 15.06 | 0.181 | 11.6 | -- | -- | -0.736 | -- | -- | 0.242 | -- | 22.62 | 174 | -- | -- |
| 29.93 | 0.255 | 11.7 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 2 | 12.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 3 | 12.68 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 4 | 12.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 12.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 17 | 12.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 21 | 12.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 26 | 12.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 28 | 12.92 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 34 | 12.94 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 36 | 12.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 42 | 12.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 46 | 13.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 50 | 13.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 67 | 13.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 90 | 13.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 102 | 13.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 127 | 13.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 139 | 13.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 141 | 13.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 143 | 13.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 163 | 13.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 172 | 13.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 266 | 13.54 | temperature | 20 | 4320 | > th | dose dependent | sin | 11 | NA |
| 296 | 13.56 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 320 | 13.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 352 | 13.60 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 367 | 13.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 386 | 13.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 440 | 13.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 550 | 13.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 639 | 13.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 721 | 13.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 801 | 13.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 837 | 13.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 845 | 13.91 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 870 | 13.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 873 | 13.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 995 | 13.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |