FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0495700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0222) R2 : 2.48e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00157 (0.0467) R2dN8 : 3.2e-06 R2N8 : 2.48e-06
σ : 0.418
deviance : 80.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.73 0.412 3.22 -0.0236 0.129 1.53 0.106 -3.56 0.0226 7.22 48.93 100 -- --
78.82 0.413 3.21 0.0314 0.105 0.517 0.135 -- 0.0116 7.41 48.25 377 -- --
76.76 0.408 3.22 -0.021 0.129 1.52 -- -3.53 0.0223 7.04 48.93 100 -- --
78.86 0.414 3.21 0.0352 0.112 0.505 -- -- 0.0168 7.36 48.55 356 -- --
77.6 0.41 3.23 -0.00769 -- 1.33 -- -3.11 0.0231 -- 48.83 100 -- --
79.69 0.419 3.21 0.0698 0.0757 -- 0.0722 -- 0.00889 8.55 -- -- -- --
79.7 0.418 3.21 0.0717 0.077 -- -- -- 0.00865 8.09 -- -- -- --
79.48 0.415 3.21 0.0456 -- 0.396 -- -- 0.0182 -- 48.76 360 -- --
78.89 0.414 3.21 -- 0.113 0.523 -- -- 0.0132 7.32 48.51 356 -- --
80.03 0.418 3.22 0.0723 -- -- -- -- 0.00959 -- -- -- -- --
79.84 0.418 3.22 -- 0.0774 -- -- -- 0.000674 8.02 -- -- -- --
79.53 0.415 3.21 -- -- 0.409 -- -- 0.0122 -- 48.7 360 -- --
80.17 0.418 3.22 -- -- -- -- -- 0.00157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.85 humidity 60.0 30 < th dose dependent rect. 17 1
3 75.28 temperature 30.0 30 > th dose dependent rect. 17 1
19 75.43 atmosphere 1005.0 30 > th dose dependent rect. 2 3
21 75.49 radiation 1.0 30 > th dose dependent rect. 17 1
33 75.65 temperature 25.0 270 > th dose independent rect. 1 1
34 75.68 humidity 60.0 30 < th dose independent rect. 17 1
36 75.92 wind 1.0 10 < th dose independent rect. 2 1
37 75.93 wind 1.0 30 < th dose dependent rect. 2 1
48 76.06 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 76.07 temperature 25.0 90 > th dose independent rect. 1 4
55 76.11 atmosphere 1005.0 10 > th dose dependent rect. 2 1
56 76.12 temperature 25.0 30 < th dose independent rect. 2 1
78 76.13 temperature 30.0 30 < th dose dependent rect. 2 1
84 76.16 temperature 10.0 30 > th dose independent rect. 2 1
87 76.16 humidity 50.0 30 > th dose independent rect. 2 1
90 76.16 atmosphere 995.0 30 > th dose independent rect. 2 1
91 76.16 atmosphere 1010.0 30 < th dose independent rect. 2 1
93 76.16 radiation 1.0 30 < th dose independent rect. 2 1
98 76.16 precipitation 0.1 30 < th dose independent rect. 2 1
99 76.16 temperature 10.0 30 > th dose independent rect. 3 23
100 76.16 humidity 50.0 30 > th dose dependent rect. 2 1
101 76.16 radiation 1.0 30 < th dose dependent rect. 2 1
106 76.16 precipitation 0.1 30 < th dose dependent rect. 2 1
112 76.18 temperature 10.0 30 > th dose dependent rect. 2 1
137 76.23 atmosphere 995.0 30 > th dose dependent rect. 2 1
150 76.27 temperature 25.0 270 > th dose dependent rect. 1 1
152 76.28 atmosphere 1005.0 30 > th dose independent rect. 2 1
168 76.38 humidity 90.0 10 < th dose independent rect. 3 2
175 76.45 wind 1.0 30 > th dose independent rect. 2 1
187 76.52 precipitation 0.1 4320 > th dose independent rect. 20 2
188 76.53 precipitation 0.1 4320 < th dose independent rect. 20 2
190 76.53 precipitation 0.1 4320 < th dose dependent rect. 20 2
208 76.54 precipitation 0.1 4320 > th dose dependent rect. 21 1
210 76.57 temperature 30.0 30 > th dose independent rect. 17 1
211 76.57 precipitation 0.1 4320 > th dose dependent rect. 20 3
248 76.61 wind 9.0 30 < th dose independent rect. 3 23
251 76.62 humidity 50.0 90 > th dose independent rect. 3 23
256 76.65 humidity 80.0 30 < th dose dependent rect. 17 17
281 76.78 humidity 90.0 270 < th dose independent rect. 1 1
282 76.79 humidity 80.0 14400 < th dose dependent rect. 4 5
293 76.81 humidity 90.0 10 < th dose dependent rect. 4 1
298 76.81 humidity 50.0 90 < th dose dependent rect. 16 20
300 76.83 humidity 80.0 14400 < th dose dependent rect. 7 2
305 76.85 temperature 10.0 1440 > th dose independent rect. 17 1
309 76.85 radiation 30.0 1440 < th dose independent rect. 17 1
316 76.85 temperature 10.0 1440 > th dose independent rect. 18 23
320 76.86 humidity 60.0 10 > th dose independent rect. 14 12
324 76.88 humidity 50.0 90 < th dose dependent sin 12 NA
334 76.88 humidity 80.0 14400 < th dose dependent rect. 1 9
345 76.90 humidity 60.0 10 < th dose independent rect. 14 4
372 76.92 precipitation 0.1 14400 > th dose independent rect. 24 9
373 76.92 atmosphere 995.0 30 > th dose independent rect. 3 23
374 76.92 temperature 25.0 30 > th dose dependent rect. 14 21
380 76.94 humidity 70.0 1440 < th dose independent rect. 10 1
383 76.95 humidity 70.0 14400 < th dose independent rect. 7 3
391 76.95 precipitation 0.1 14400 < th dose independent rect. 24 9
398 76.95 precipitation 0.1 14400 < th dose dependent rect. 24 9
402 76.96 humidity 60.0 270 < th dose dependent rect. 13 3
404 76.97 humidity 70.0 14400 > th dose independent rect. 7 3
405 76.97 humidity 60.0 270 < th dose independent rect. 13 3
509 77.03 precipitation 0.1 14400 > th dose dependent rect. 24 9
544 77.05 humidity 90.0 720 > th dose independent rect. 3 2
579 77.08 humidity 60.0 14400 < th dose independent rect. 11 1
584 77.09 humidity 50.0 90 > th dose independent sin 12 NA
585 77.09 humidity 70.0 1440 > th dose independent rect. 10 1
589 77.09 radiation 40.0 720 < th dose independent rect. 15 8
618 77.10 wind 1.0 14400 < th dose dependent rect. 6 1
636 77.11 humidity 50.0 90 < th dose independent sin 12 NA
638 77.11 radiation 20.0 90 > th dose independent rect. 16 15
643 77.12 radiation 10.0 90 > th dose independent rect. 16 2
660 77.12 humidity 50.0 90 < th dose dependent sin 9 NA
685 77.13 temperature 25.0 720 > th dose dependent rect. 5 3
693 77.15 radiation 20.0 720 > th dose independent rect. 15 1
698 77.15 temperature 10.0 720 > th dose independent rect. 15 8
701 77.15 temperature 10.0 720 > th dose independent rect. 23 16
752 77.20 atmosphere 995.0 720 > th dose independent rect. 23 16
754 77.20 humidity 50.0 14400 > th dose dependent rect. 8 1
823 77.23 humidity 50.0 90 < th dose independent sin 9 NA
846 77.23 atmosphere 1015.0 720 < th dose independent rect. 3 8
878 77.23 humidity 60.0 14400 < th dose dependent rect. 12 1
900 77.25 atmosphere 1000.0 30 > th dose independent rect. 5 21
901 77.25 radiation 10.0 720 > th dose dependent rect. 15 1
923 77.27 humidity 60.0 4320 > th dose dependent rect. 3 8
973 77.31 humidity 70.0 4320 > th dose independent sin 5 NA
977 77.31 humidity 70.0 4320 > th dose independent rect. 8 5
984 77.31 humidity 70.0 4320 > th dose dependent rect. 5 5