Os07g0495300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os07g0495300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.49 | 0.543 | 3.51 | 0.168 | 0.493 | 0.976 | 0.15 | -2.98 | 0.24 | 12.7 | 58 | 376 | -- | -- |
| 137.52 | 0.546 | 3.48 | 0.266 | 0.474 | 0.775 | -0.0639 | -- | 0.243 | 12.3 | 59 | 395 | -- | -- |
| 133.52 | 0.538 | 3.51 | 0.169 | 0.501 | 1.01 | -- | -3.05 | 0.24 | 12.7 | 58 | 400 | -- | -- |
| 137.24 | 0.546 | 3.49 | 0.254 | 0.497 | 0.64 | -- | -- | 0.22 | 12.7 | 58.54 | 414 | -- | -- |
| 146.97 | 0.565 | 3.51 | 0.243 | -- | 0.943 | -- | -2.14 | 0.243 | -- | 58 | 222 | -- | -- |
| 144.11 | 0.563 | 3.51 | 0.315 | 0.56 | -- | 0.0958 | -- | 0.166 | 13.8 | -- | -- | -- | -- |
| 144.14 | 0.562 | 3.51 | 0.318 | 0.56 | -- | -- | -- | 0.167 | 13.8 | -- | -- | -- | -- |
| 145.4 | 0.562 | 3.52 | 0.298 | -- | 0.522 | -- | -- | 0.179 | -- | 68.84 | 151 | -- | -- |
| 138.88 | 0.549 | 3.5 | -- | 0.484 | 0.679 | -- | -- | 0.194 | 12.6 | 58.39 | 386 | -- | -- |
| 163.16 | 0.597 | 3.51 | 0.295 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 146.8 | 0.567 | 3.51 | -- | 0.555 | -- | -- | -- | 0.131 | 13.8 | -- | -- | -- | -- |
| 144.94 | 0.561 | 3.49 | -- | -- | 0.478 | -- | -- | 0.163 | -- | 72 | 63 | -- | -- |
| 165.45 | 0.6 | 3.52 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.45 | humidity | 60 | 270 | > th | dose independent | rect. | 9 | 23 |
| 2 | 133.49 | humidity | 60 | 270 | > th | dose independent | rect. | 24 | 23 |
| 4 | 133.75 | humidity | 60 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 5 | 133.76 | humidity | 60 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 9 | 133.91 | humidity | 60 | 720 | > th | dose independent | rect. | 2 | 13 |
| 12 | 133.95 | humidity | 60 | 270 | < th | dose dependent | sin | 0 | NA |
| 13 | 133.96 | humidity | 60 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 14 | 133.98 | humidity | 60 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 17 | 133.99 | humidity | 60 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 47 | 134.02 | humidity | 60 | 720 | < th | dose independent | rect. | 16 | 20 |
| 61 | 134.03 | humidity | 60 | 270 | < th | dose dependent | no | NA | NA |
| 173 | 134.13 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 11 |
| 179 | 134.15 | humidity | 60 | 270 | < th | dose independent | rect. | 13 | 23 |
| 183 | 134.19 | humidity | 60 | 270 | < th | dose independent | rect. | 16 | 23 |
| 187 | 134.26 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 23 |
| 188 | 134.27 | humidity | 50 | 720 | > th | dose independent | rect. | 12 | 17 |
| 196 | 134.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 206 | 134.42 | humidity | 60 | 270 | < th | dose independent | no | NA | NA |
| 207 | 134.42 | humidity | 60 | 270 | < th | dose independent | rect. | 9 | 11 |
| 285 | 134.42 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 23 |
| 305 | 134.45 | humidity | 60 | 270 | < th | dose independent | rect. | 19 | 23 |
| 307 | 134.47 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 343 | 134.53 | wind | 5 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 368 | 134.55 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 389 | 134.57 | humidity | 60 | 270 | > th | dose independent | no | NA | NA |
| 463 | 134.63 | humidity | 60 | 720 | < th | dose independent | sin | 4 | NA |
| 467 | 134.64 | humidity | 60 | 720 | > th | dose independent | sin | 4 | NA |
| 469 | 134.64 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 10 |
| 474 | 134.65 | humidity | 60 | 270 | < th | dose independent | sin | 22 | NA |
| 486 | 134.70 | humidity | 60 | 720 | > th | dose independent | rect. | 22 | 16 |
| 539 | 134.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 545 | 134.78 | humidity | 60 | 720 | > th | dose independent | rect. | 20 | 18 |
| 567 | 134.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 577 | 134.88 | humidity | 60 | 270 | < th | dose dependent | sin | 10 | NA |
| 587 | 134.90 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 600 | 134.95 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 11 |
| 604 | 134.98 | humidity | 60 | 720 | > th | dose independent | rect. | 18 | 21 |
| 607 | 134.99 | humidity | 60 | 270 | > th | dose independent | sin | 23 | NA |
| 630 | 135.01 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 632 | 135.03 | wind | 5 | 1440 | > th | dose independent | sin | 7 | NA |
| 639 | 135.05 | wind | 5 | 1440 | < th | dose independent | sin | 7 | NA |
| 643 | 135.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 644 | 135.06 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 10 |
| 655 | 135.10 | humidity | 60 | 720 | < th | dose independent | rect. | 11 | 2 |
| 791 | 135.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 802 | 135.31 | humidity | 60 | 720 | < th | dose independent | rect. | 9 | 5 |
| 844 | 135.34 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 962 | 135.37 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 974 | 135.39 | humidity | 60 | 720 | > th | dose independent | rect. | 2 | 17 |
| 983 | 135.41 | wind | 3 | 1440 | < th | dose independent | rect. | 24 | 1 |