Os07g0495100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Possible protein kinase CK2 regulatory subunit (Fragment).
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Os07g0495100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Possible protein kinase CK2 regulatory subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.32 | 0.295 | 11.3 | -0.662 | 0.999 | -0.0103 | 0.34 | -4.1 | -0.167 | 17.2 | 30.06 | 1527 | -- | -- |
| 39.86 | 0.294 | 11.2 | 0.121 | 1.01 | -0.464 | 0.332 | -- | -0.0173 | 17.2 | 29.2 | 1477 | -- | -- |
| 39.61 | 0.293 | 11.3 | -0.665 | 1 | -0.0105 | -- | -4.11 | -0.166 | 17.2 | 30.06 | 1523 | -- | -- |
| 40.15 | 0.295 | 11.2 | 0.115 | 1.02 | -0.464 | -- | -- | -0.0168 | 17.2 | 29.2 | 1475 | -- | -- |
| 90.7 | 0.444 | 11.3 | -0.855 | -- | 0.0217 | -- | -4.48 | -0.234 | -- | 30.09 | 1400 | -- | -- |
| 50.26 | 0.332 | 11.2 | -0.0301 | 1.03 | -- | 0.414 | -- | -0.0501 | 17.2 | -- | -- | -- | -- |
| 50.69 | 0.333 | 11.2 | -0.0298 | 1.04 | -- | -- | -- | -0.0481 | 17.1 | -- | -- | -- | -- |
| 92.67 | 0.448 | 11.2 | 0.111 | -- | -0.52 | -- | -- | -0.0175 | -- | 29.2 | 1360 | -- | -- |
| 40.51 | 0.296 | 11.2 | -- | 1.01 | -0.448 | -- | -- | -0.018 | 17.2 | 29.2 | 1480 | -- | -- |
| 106.82 | 0.483 | 11.2 | -0.0666 | -- | -- | -- | -- | -0.0743 | -- | -- | -- | -- | -- |
| 50.71 | 0.333 | 11.2 | -- | 1.04 | -- | -- | -- | -0.0448 | 17.1 | -- | -- | -- | -- |
| 92.99 | 0.449 | 11.2 | -- | -- | -0.502 | -- | -- | -0.0294 | -- | 29.26 | 1360 | -- | -- |
| 106.94 | 0.483 | 11.2 | -- | -- | -- | -- | -- | -0.0669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 2 | 35.57 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 4 | 35.60 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 7 | 35.66 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 26 | 36.01 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 36 | 36.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 50 | 36.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 123 | 37.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 140 | 37.22 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 170 | 37.47 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 176 | 37.48 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 178 | 37.49 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 184 | 37.50 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 191 | 37.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 193 | 37.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 197 | 37.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 239 | 37.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 275 | 37.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 282 | 37.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 325 | 38.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 394 | 38.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 410 | 38.43 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 412 | 38.45 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 531 | 38.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 551 | 38.80 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 568 | 38.83 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 589 | 38.86 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 615 | 38.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 620 | 38.88 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 732 | 39.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 753 | 39.08 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 763 | 39.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 764 | 39.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 820 | 39.18 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 849 | 39.21 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 854 | 39.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 855 | 39.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 872 | 39.25 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 884 | 39.25 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 912 | 39.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 925 | 39.28 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 932 | 39.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 954 | 39.30 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 997 | 39.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |