Os07g0494800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0494800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.84 | 0.565 | 5.13 | 2.87 | 0.911 | -0.659 | -0.02 | -1.56 | 0.637 | 4.88 | 48 | 1296 | -- | -- |
| 145.59 | 0.562 | 5.11 | 2.91 | 0.897 | -1.24 | -0.288 | -- | 0.626 | 4.52 | 47.06 | 1361 | -- | -- |
| 144.84 | 0.561 | 5.13 | 2.87 | 0.911 | -0.662 | -- | -1.55 | 0.636 | 4.89 | 48.07 | 1307 | -- | -- |
| 144.78 | 0.56 | 5.1 | 2.92 | 0.899 | -1.38 | -- | -- | 0.652 | 4.88 | 47.1 | 1283 | -- | -- |
| 187.3 | 0.637 | 5.13 | 2.92 | -- | -0.85 | -- | -1.16 | 0.678 | -- | 47.99 | 1877 | -- | -- |
| 160.16 | 0.593 | 5.1 | 2.7 | 0.892 | -- | -0.132 | -- | 0.681 | 5.06 | -- | -- | -- | -- |
| 160.2 | 0.593 | 5.1 | 2.7 | 0.891 | -- | -- | -- | 0.682 | 5.08 | -- | -- | -- | -- |
| 183.88 | 0.632 | 5.13 | 3.07 | -- | -1.44 | -- | -- | 0.663 | -- | 47.41 | 4977 | -- | -- |
| 350.22 | 0.876 | 5.16 | -- | 0.949 | 0.824 | -- | -- | 0.389 | 4.89 | 47.1 | 1283 | -- | -- |
| 201.87 | 0.664 | 5.11 | 2.73 | -- | -- | -- | -- | 0.705 | -- | -- | -- | -- | -- |
| 352.57 | 0.878 | 5.16 | -- | 0.939 | -- | -- | -- | 0.381 | 4.98 | -- | -- | -- | -- |
| 248.38 | 0.734 | 5.26 | -- | -- | -2.33 | -- | -- | 0.0318 | -- | 56.74 | 47520 | -- | -- |
| 398.98 | 0.932 | 5.17 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.75 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 2 | 129.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 3 | 129.91 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 7 | 131.56 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 9 | 131.67 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 10 | 131.88 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 18 | 132.40 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 23 | 132.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 26 | 132.76 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 42 | 133.15 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 44 | 133.22 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 55 | 133.36 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 68 | 133.52 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 73 | 133.54 | humidity | 50.0 | 14400 | < th | dose independent | no | NA | NA |
| 74 | 133.54 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 211 | 133.62 | humidity | 50.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 224 | 133.71 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 246 | 133.78 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 249 | 133.79 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 253 | 133.83 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 257 | 133.85 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 261 | 133.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 350 | 133.89 | humidity | 50.0 | 14400 | > th | dose independent | no | NA | NA |
| 405 | 133.94 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 14 | 21 |
| 433 | 134.00 | humidity | 50.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 460 | 134.04 | humidity | 50.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 511 | 134.31 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 15 |
| 515 | 134.33 | wind | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 517 | 134.33 | wind | 1.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 545 | 134.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 547 | 134.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 550 | 134.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 553 | 134.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 557 | 134.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 566 | 134.49 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 584 | 134.51 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 603 | 134.56 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 621 | 134.58 | humidity | 50.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 627 | 134.60 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 643 | 134.61 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 650 | 134.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 651 | 134.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 658 | 134.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 763 | 134.89 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 800 | 134.96 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 903 | 135.22 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 909 | 135.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 918 | 135.27 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 15 |
| 924 | 135.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 930 | 135.33 | wind | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |