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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0493800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0426) R2 : 0.264
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.15 (0.112) R2dC : 0.189 R2C : 0.068
β3 : -1.91 (0.185) R2dE : 0.192 R2E : 0.0636
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.191 (0.0898) R2dN8 : 0.00935 R2N8 : 0.00465
σ : 0.8
deviance : 295.17
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_____
C
peak time of C : 3
E
wheather : humidity
threshold : 100.1
memory length : 1190
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.18 0.804 3.29 0.283 1.11 -1.86 0.161 -0.0678 0.223 3.31 95 1255 -- --
292.85 0.797 3.29 0.296 1.15 -1.94 0.157 -- 0.225 2.97 114.6 1192 -- --
292.91 0.797 3.29 0.282 1.15 -1.93 -- 0.066 0.22 3.02 95.92 1192 -- --
292.9 0.797 3.29 0.292 1.15 -1.94 -- -- 0.224 2.98 96 1189 -- --
338.28 0.857 3.28 0.276 -- -1.57 -- 0.51 0.34 -- 96.5 293 -- --
360.18 0.89 3.3 0.174 0.836 -- -0.197 -- 0.156 4.08 -- -- -- --
360.29 0.889 3.3 0.176 0.834 -- -- -- 0.157 4.05 -- -- -- --
336.28 0.854 3.3 0.216 -- -1.5 -- -- 0.187 -- 102.5 225 -- --
295.17 0.8 3.3 -- 1.15 -1.91 -- -- 0.191 3 100.1 1190 -- --
398.18 0.932 3.3 0.21 -- -- -- -- 0.179 -- -- -- -- --
361.1 0.889 3.3 -- 0.838 -- -- -- 0.138 4.05 -- -- -- --
327.45 0.843 3.29 -- -- -1.76 -- -- 0.146 -- 137.7 1694 -- --
399.34 0.933 3.31 -- -- -- -- -- 0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.50 humidity 80 1440 > th dose independent rect. 7 12
2 288.56 humidity 80 1440 > th dose independent rect. 5 14
6 288.78 humidity 80 1440 < th dose independent rect. 7 12
8 288.95 humidity 80 1440 < th dose independent rect. 5 14
9 288.98 humidity 60 1440 > th dose dependent rect. 11 3
10 288.99 humidity 80 1440 < th dose independent rect. 3 16
19 289.28 humidity 80 1440 > th dose independent sin 1 NA
22 289.49 humidity 80 1440 < th dose independent sin 1 NA
70 290.62 humidity 80 1440 < th dose independent rect. 8 7
110 291.80 humidity 60 1440 > th dose dependent rect. 9 7
118 292.08 humidity 90 1440 < th dose dependent rect. 11 3
148 292.67 humidity 90 720 > th dose dependent rect. 20 3
171 293.14 humidity 60 1440 > th dose dependent sin 0 NA
173 293.19 humidity 60 1440 > th dose dependent rect. 3 14
183 293.46 humidity 90 1440 < th dose dependent rect. 13 1
191 293.58 radiation 1 1440 < th dose dependent rect. 9 8
209 293.78 humidity 90 1440 < th dose dependent rect. 8 8
215 293.81 humidity 90 1440 < th dose dependent rect. 3 13
223 294.01 radiation 1 1440 < th dose dependent rect. 12 5
295 294.76 radiation 1 1440 < th dose independent sin 23 NA
306 294.88 humidity 90 1440 < th dose dependent sin 0 NA
351 295.13 radiation 1 1440 > th dose independent sin 23 NA
355 295.15 humidity 70 1440 < th dose independent rect. 10 5
426 295.59 radiation 10 1440 < th dose dependent rect. 8 11
434 295.62 radiation 10 1440 < th dose dependent rect. 8 15
443 295.64 radiation 10 1440 < th dose dependent rect. 8 19
457 295.72 humidity 50 1440 > th dose dependent rect. 9 21
484 295.85 humidity 90 1440 < th dose dependent rect. 9 21
486 295.87 radiation 10 1440 < th dose dependent sin 21 NA
657 296.56 humidity 90 1440 < th dose dependent rect. 9 16
703 296.68 humidity 70 1440 < th dose independent rect. 18 22
728 296.75 humidity 90 720 > th dose dependent rect. 9 15
739 296.77 humidity 90 1440 < th dose dependent rect. 11 23
752 296.81 humidity 90 1440 < th dose dependent no NA NA
819 297.07 humidity 50 1440 > th dose dependent no NA NA
847 297.15 humidity 60 720 > th dose dependent rect. 16 7
996 297.68 radiation 20 1440 < th dose dependent rect. 11 6