Os07g0493200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0493200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.68 | 0.256 | 7.88 | -0.0946 | 0.358 | -0.356 | -0.231 | -2.72 | 0.341 | 22.3 | 9.051 | 4357 | -- | -- |
| 34.45 | 0.273 | 7.85 | -0.24 | 0.324 | -0.425 | -0.348 | -- | 0.305 | 22.1 | 21.96 | 28660 | -- | -- |
| 29.64 | 0.254 | 7.89 | -0.074 | 0.364 | -0.365 | -- | -2.84 | 0.334 | 22.3 | 8.497 | 4414 | -- | -- |
| 32.63 | 0.266 | 7.86 | -0.344 | 0.242 | -0.444 | -- | -- | 0.289 | 21.8 | 5.67 | 28619 | -- | -- |
| 35.81 | 0.279 | 7.89 | -0.0421 | -- | -0.326 | -- | -2.48 | 0.397 | -- | 10.14 | 11048 | -- | -- |
| 39.71 | 0.295 | 7.85 | -0.392 | 0.36 | -- | -0.292 | -- | 0.367 | 22.5 | -- | -- | -- | -- |
| 40.06 | 0.296 | 7.85 | -0.38 | 0.362 | -- | -- | -- | 0.368 | 22.4 | -- | -- | -- | -- |
| 34.08 | 0.272 | 7.94 | -0.625 | -- | -0.673 | -- | -- | 0.103 | -- | 4.625 | 29833 | -- | -- |
| 36.72 | 0.282 | 7.87 | -- | 0.353 | -0.466 | -- | -- | 0.283 | 22.4 | 23.69 | 30208 | -- | -- |
| 48.09 | 0.324 | 7.84 | -0.374 | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
| 43.87 | 0.31 | 7.84 | -- | 0.36 | -- | -- | -- | 0.41 | 22.3 | -- | -- | -- | -- |
| 40.08 | 0.295 | 7.88 | -- | -- | -0.69 | -- | -- | 0.196 | -- | 8.333 | 29850 | -- | -- |
| 51.78 | 0.336 | 7.83 | -- | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 2 | 26.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 3 | 26.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 4 | 26.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 5 | 26.69 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 7 |
| 10 | 26.79 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 11 | 26.81 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 37 | 26.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 42 | 26.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 43 | 26.90 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 44 | 26.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 46 | 26.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 48 | 26.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 49 | 26.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 79 | 27.06 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 99 | 27.11 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 104 | 27.14 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 105 | 27.14 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 138 | 27.25 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 11 | 19 |
| 144 | 27.28 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 217 | 27.33 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 271 | 27.35 | radiation | 30.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 296 | 27.38 | radiation | 10.0 | 14400 | < th | dose dependent | no | NA | NA |
| 434 | 27.40 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 438 | 27.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 439 | 27.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 441 | 27.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 467 | 27.44 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 476 | 27.45 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 502 | 27.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 505 | 27.46 | radiation | 40.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 506 | 27.46 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 525 | 27.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 556 | 27.48 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 22 |
| 560 | 27.49 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 583 | 27.50 | radiation | 1.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 585 | 27.50 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 681 | 27.53 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 784 | 27.55 | radiation | 30.0 | 14400 | < th | dose dependent | no | NA | NA |
| 799 | 27.55 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 839 | 27.55 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 848 | 27.56 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 857 | 27.56 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 898 | 27.57 | radiation | 30.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 924 | 27.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 943 | 27.58 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 11 | 4 |