Os07g0493100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0493100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.11 | 0.731 | 6.12 | -2.42 | 1.08 | 1.05 | 1.08 | 2.5 | -0.342 | 21.6 | 24.3 | 4 | -- | -- |
| 244.88 | 0.729 | 6.15 | -2.72 | 1.09 | 1.25 | 0.831 | -- | -0.418 | 21.6 | 24.6 | 10 | -- | -- |
| 246.02 | 0.736 | 6.12 | -2.54 | 1.08 | 1.09 | -- | 1.84 | -0.357 | 21.5 | 24.48 | 4 | -- | -- |
| 247.52 | 0.738 | 6.15 | -2.77 | 1.09 | 1.26 | -- | -- | -0.417 | 21.6 | 24.6 | 10 | -- | -- |
| 277.45 | 0.776 | 6.1 | -2.6 | -- | 1.29 | -- | 1.76 | -0.394 | -- | 23.94 | 599 | -- | -- |
| 268.84 | 0.769 | 6.12 | -2.55 | 1.11 | -- | 0.907 | -- | -0.297 | 19.9 | -- | -- | -- | -- |
| 271.24 | 0.771 | 6.12 | -2.58 | 1.11 | -- | -- | -- | -0.296 | 19.9 | -- | -- | -- | -- |
| 279.08 | 0.778 | 6.13 | -2.86 | -- | 1.44 | -- | -- | -0.453 | -- | 24.29 | 590 | -- | -- |
| 441.42 | 0.984 | 6.07 | -- | 1.09 | 0.556 | -- | -- | -0.0533 | 20.4 | 24.6 | 10 | -- | -- |
| 338 | 0.859 | 6.1 | -2.59 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 446.22 | 0.988 | 6.06 | -- | 1.13 | -- | -- | -- | -0.00926 | 19.7 | -- | -- | -- | -- |
| 487.17 | 1.03 | 6.04 | -- | -- | 0.97 | -- | -- | -0.0697 | -- | 25.1 | 524 | -- | -- |
| 514.84 | 1.06 | 6.03 | -- | -- | -- | -- | -- | -0.0241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 12 | 239.45 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 17 | 240.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 24 | 241.40 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 25 | 241.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 29 | 241.60 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 34 | 241.81 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 40 | 242.03 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 41 | 242.05 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 23 |
| 53 | 242.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 56 | 242.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 75 | 242.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 81 | 242.75 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 83 | 242.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 84 | 242.82 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 103 | 243.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 106 | 243.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 108 | 243.11 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 112 | 243.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 122 | 243.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 128 | 243.24 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 23 |
| 139 | 243.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 146 | 243.40 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 149 | 243.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 154 | 243.47 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 211 | 243.87 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 221 | 243.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 226 | 244.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 231 | 244.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 232 | 244.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 253 | 244.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 272 | 244.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 274 | 244.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 16 |
| 277 | 244.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 297 | 244.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 301 | 244.34 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 311 | 244.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 322 | 244.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 344 | 244.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 22 |
| 348 | 244.47 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 367 | 244.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 20 |
| 394 | 244.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 398 | 244.54 | temperature | 10 | 4320 | > th | dose dependent | sin | 17 | NA |
| 414 | 244.55 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 430 | 244.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 436 | 244.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 450 | 244.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 473 | 244.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 539 | 244.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 13 |
| 549 | 244.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 18 |
| 558 | 244.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 16 |
| 566 | 244.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 21 |
| 616 | 244.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 11 |
| 642 | 244.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 661 | 244.79 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 676 | 244.80 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 721 | 244.83 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 723 | 244.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 746 | 244.84 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 757 | 244.85 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 760 | 244.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 767 | 244.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 794 | 244.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 807 | 244.90 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 827 | 244.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 848 | 244.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 867 | 244.93 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 947 | 244.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 974 | 244.99 | humidity | 60 | 90 | > th | dose independent | rect. | 5 | 20 |
| 992 | 245.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 993 | 245.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |