Os07g0492100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UvrD/REP helicase family protein.
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Os07g0492100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UvrD/REP helicase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.65 | 0.277 | 9.62 | 0.0931 | 0.578 | -0.907 | 0.0216 | 1.48 | 0.159 | 21.1 | 28.32 | 288 | -- | -- |
| 36.87 | 0.283 | 9.61 | 0.247 | 0.68 | -0.79 | -0.26 | -- | 0.225 | 19.6 | 23.73 | 2297 | -- | -- |
| 34.64 | 0.274 | 9.63 | 0.0912 | 0.576 | -0.901 | -- | 1.47 | 0.16 | 21.1 | 28.01 | 292 | -- | -- |
| 36.51 | 0.281 | 9.6 | 0.299 | 0.69 | -1 | -- | -- | 0.229 | 19.9 | 24.12 | 1753 | -- | -- |
| 46.45 | 0.317 | 9.63 | -0.105 | -- | -1.26 | -- | 1.94 | 0.0645 | -- | 29.8 | 569 | -- | -- |
| 49.7 | 0.33 | 9.55 | 0.596 | 0.714 | -- | -0.17 | -- | 0.429 | 19.8 | -- | -- | -- | -- |
| 49.78 | 0.33 | 9.55 | 0.601 | 0.713 | -- | -- | -- | 0.428 | 19.9 | -- | -- | -- | -- |
| 49.14 | 0.326 | 9.59 | 0.255 | -- | -1.29 | -- | -- | 0.158 | -- | 29.3 | 574 | -- | -- |
| 36.68 | 0.282 | 9.62 | -- | 0.715 | -0.967 | -- | -- | 0.206 | 19.7 | 22.7 | 7588 | -- | -- |
| 77.4 | 0.411 | 9.53 | 0.593 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 59.29 | 0.36 | 9.57 | -- | 0.709 | -- | -- | -- | 0.362 | 19.9 | -- | -- | -- | -- |
| 50.69 | 0.332 | 9.6 | -- | -- | -1.38 | -- | -- | 0.113 | -- | 29.2 | 584 | -- | -- |
| 86.67 | 0.435 | 9.55 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 2 | 34.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 8 | 34.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 18 | 34.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 19 | 34.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 25 | 34.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 28 | 34.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 30 | 34.95 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 37 | 34.98 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 66 | 35.07 | humidity | 70 | 43200 | < th | dose dependent | sin | 7 | NA |
| 87 | 35.15 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 111 | 35.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 132 | 35.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 139 | 35.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 153 | 35.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 175 | 35.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 211 | 35.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 222 | 35.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 230 | 35.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 236 | 35.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 260 | 35.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 279 | 35.44 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 343 | 35.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 375 | 35.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 404 | 35.52 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 424 | 35.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 430 | 35.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 497 | 35.57 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 536 | 35.59 | humidity | 60 | 43200 | > th | dose independent | sin | 8 | NA |
| 764 | 35.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 815 | 35.71 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 881 | 35.74 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 883 | 35.74 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 904 | 35.75 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 974 | 35.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |