Os07g0491500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0491500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.38 | 0.461 | 7.28 | 0.322 | 0.0566 | -0.795 | -0.166 | -2.18 | -0.479 | 10.9 | 23.66 | 4535 | -- | -- |
| 102.29 | 0.471 | 7.34 | -0.142 | 0.00629 | -0.685 | 0.251 | -- | -0.527 | 22.9 | 28.5 | 5836 | -- | -- |
| 96.46 | 0.457 | 7.28 | 0.323 | 0.0669 | -0.801 | -- | -2.22 | -0.478 | 12.6 | 23.68 | 4531 | -- | -- |
| 100.39 | 0.467 | 7.33 | -0.278 | 0.104 | -0.849 | -- | -- | -0.505 | 11.4 | 28.53 | 5397 | -- | -- |
| 96.71 | 0.458 | 7.28 | 0.308 | -- | -0.794 | -- | -2.16 | -0.481 | -- | 23.7 | 4569 | -- | -- |
| 128.63 | 0.532 | 7.31 | -0.00546 | 0.0399 | -- | -0.227 | -- | -0.412 | 8.61 | -- | -- | -- | -- |
| 128.8 | 0.531 | 7.31 | -0.0127 | 0.0404 | -- | -- | -- | -0.412 | 8.62 | -- | -- | -- | -- |
| 101.21 | 0.469 | 7.34 | -0.283 | -- | -0.831 | -- | -- | -0.509 | -- | 28.5 | 5396 | -- | -- |
| 102.51 | 0.472 | 7.33 | -- | 0.104 | -0.793 | -- | -- | -0.476 | 11.4 | 28.6 | 5396 | -- | -- |
| 128.89 | 0.53 | 7.31 | -0.0126 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 128.8 | 0.531 | 7.31 | -- | 0.0404 | -- | -- | -- | -0.411 | 8.65 | -- | -- | -- | -- |
| 103.29 | 0.473 | 7.32 | -- | -- | -0.772 | -- | -- | -0.474 | -- | 28.5 | 5396 | -- | -- |
| 128.9 | 0.53 | 7.31 | -- | -- | -- | -- | -- | -0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.56 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 4 | 94.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 12 | 94.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 68 | 95.52 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 71 | 95.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 113 | 95.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 114 | 95.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 280 | 96.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 400 | 97.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 434 | 97.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 445 | 97.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 451 | 97.25 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 519 | 97.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 559 | 97.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 602 | 97.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 611 | 97.58 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 681 | 97.69 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 701 | 97.71 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 752 | 97.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 771 | 97.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 780 | 97.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 832 | 97.89 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 853 | 97.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 878 | 97.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 968 | 98.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |