Os07g0490300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Preproacrosin.
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Os07g0490300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Preproacrosin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.21 | 0.226 | 10.5 | 0.668 | 0.493 | 0.203 | 0.294 | -0.494 | -0.0141 | 8.65 | 20.51 | 234 | -- | -- |
| 24.25 | 0.229 | 10.5 | 0.613 | 0.497 | 0.273 | 0.275 | -- | -0.0128 | 8.63 | 20.6 | 270 | -- | -- |
| 23.49 | 0.226 | 10.5 | 0.673 | 0.494 | 0.206 | -- | -0.488 | -0.0133 | 8.63 | 20.5 | 228 | -- | -- |
| 24.44 | 0.23 | 10.6 | 0.606 | 0.488 | 0.261 | -- | -- | -0.0297 | 8.61 | 20.5 | 276 | -- | -- |
| 35.83 | 0.279 | 10.5 | 0.754 | -- | 0.349 | -- | -0.35 | 0.0334 | -- | 20.7 | 564 | -- | -- |
| 26.36 | 0.241 | 10.6 | 0.506 | 0.493 | -- | 0.29 | -- | -0.0819 | 8.44 | -- | -- | -- | -- |
| 26.62 | 0.242 | 10.6 | 0.515 | 0.494 | -- | -- | -- | -0.0822 | 8.35 | -- | -- | -- | -- |
| 35.28 | 0.277 | 10.6 | 0.618 | -- | 0.324 | -- | -- | 0.0471 | -- | 25.21 | 635 | -- | -- |
| 33.21 | 0.27 | 10.6 | -- | 0.504 | 0.0941 | -- | -- | -0.124 | 8.43 | 20.5 | 276 | -- | -- |
| 40.16 | 0.296 | 10.6 | 0.518 | -- | -- | -- | -- | -0.077 | -- | -- | -- | -- | -- |
| 33.61 | 0.271 | 10.6 | -- | 0.496 | -- | -- | -- | -0.14 | 8.28 | -- | -- | -- | -- |
| 44.66 | 0.311 | 10.6 | -- | -- | 0.216 | -- | -- | -0.0538 | -- | 25.3 | 590 | -- | -- |
| 47.24 | 0.321 | 10.6 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.66 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 2 | 22.68 | wind | 9 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 10 | 22.74 | wind | 1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 11 | 22.74 | wind | 9 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 20 | 22.81 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 58 | 22.95 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 62 | 22.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 71 | 22.96 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 84 | 22.98 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 89 | 22.99 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 91 | 22.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 106 | 23.03 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 6 |
| 130 | 23.06 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 170 | 23.12 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 183 | 23.13 | wind | 9 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 184 | 23.13 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 185 | 23.13 | wind | 1 | 14400 | > th | dose dependent | sin | 12 | NA |
| 195 | 23.14 | wind | 9 | 14400 | < th | dose dependent | sin | 11 | NA |
| 212 | 23.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 215 | 23.17 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 218 | 23.17 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 275 | 23.23 | humidity | 70 | 43200 | > th | dose dependent | sin | 15 | NA |
| 309 | 23.26 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 21 |
| 310 | 23.26 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 315 | 23.26 | wind | 9 | 4320 | > th | dose dependent | rect. | 9 | 6 |
| 415 | 23.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 441 | 23.33 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 468 | 23.34 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 469 | 23.34 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 486 | 23.35 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 487 | 23.35 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 21 |
| 524 | 23.37 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 545 | 23.38 | wind | 9 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 548 | 23.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 551 | 23.38 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 567 | 23.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 593 | 23.40 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 611 | 23.41 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 616 | 23.41 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 641 | 23.42 | wind | 3 | 14400 | > th | dose independent | sin | 12 | NA |
| 642 | 23.42 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 645 | 23.42 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 651 | 23.42 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 681 | 23.43 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 684 | 23.43 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 699 | 23.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 721 | 23.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 762 | 23.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 21 |
| 764 | 23.45 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 769 | 23.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 787 | 23.46 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 19 |
| 802 | 23.47 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 805 | 23.47 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 811 | 23.47 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 839 | 23.48 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 865 | 23.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 872 | 23.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 882 | 23.49 | wind | 3 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 912 | 23.50 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 919 | 23.50 | wind | 5 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 980 | 23.51 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 987 | 23.52 | wind | 3 | 14400 | < th | dose independent | sin | 12 | NA |