Os07g0490200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ankyrin repeat-rich membrane-spanning protein.
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Os07g0490200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ankyrin repeat-rich membrane-spanning protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.73 | 0.192 | 11.1 | 0.68 | 0.498 | -0.666 | -0.363 | 0.261 | 0.36 | 6.2 | 24.5 | 12 | -- | -- |
| 16.68 | 0.19 | 11.1 | 0.663 | 0.503 | -0.638 | -0.36 | -- | 0.37 | 6.14 | 23.62 | 18 | -- | -- |
| 16.95 | 0.192 | 11.1 | 0.685 | 0.509 | -0.625 | -- | 0.262 | 0.374 | 5.99 | 23.8 | 12 | -- | -- |
| 16.98 | 0.192 | 11.1 | 0.651 | 0.515 | -0.602 | -- | -- | 0.369 | 5.97 | 23.36 | 12 | -- | -- |
| 23.28 | 0.225 | 11.1 | 0.917 | -- | -1.03 | -- | 1.36 | 0.441 | -- | 24.11 | 243 | -- | -- |
| 22.63 | 0.223 | 11.1 | 0.54 | 0.7 | -- | 0.0773 | -- | 0.284 | 4.98 | -- | -- | -- | -- |
| 22.65 | 0.223 | 11.1 | 0.54 | 0.701 | -- | -- | -- | 0.283 | 5 | -- | -- | -- | -- |
| 24.09 | 0.229 | 11.1 | 0.716 | -- | -0.931 | -- | -- | 0.392 | -- | 24.2 | 242 | -- | -- |
| 27.17 | 0.244 | 11.1 | -- | 0.573 | -0.444 | -- | -- | 0.252 | 5.58 | 25 | 12 | -- | -- |
| 48.48 | 0.325 | 11.1 | 0.565 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 30.32 | 0.258 | 11.1 | -- | 0.711 | -- | -- | -- | 0.223 | 4.97 | -- | -- | -- | -- |
| 37.2 | 0.284 | 11.1 | -- | -- | -0.83 | -- | -- | 0.296 | -- | 24.5 | 243 | -- | -- |
| 56.9 | 0.352 | 11.1 | -- | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 6 | 15.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 10 | 15.50 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 112 | 16.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 145 | 16.19 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 178 | 16.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 220 | 16.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 259 | 16.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 278 | 16.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 347 | 16.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 391 | 16.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 401 | 16.76 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 445 | 16.79 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 461 | 16.82 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 503 | 16.86 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 14 |
| 575 | 16.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 637 | 16.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 638 | 17.00 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 710 | 17.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 777 | 17.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 934 | 17.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 935 | 17.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |