Os07g0486400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0486400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.05 | 0.396 | 8.59 | -2.44 | 0.597 | -1.83 | -0.338 | -4.91 | -0.096 | 5.98 | 1.009 | 4223 | -- | -- |
| 84.84 | 0.429 | 8.47 | -1.61 | 0.59 | -1.55 | 0.00213 | -- | 0.208 | 6.75 | 1.86 | 7070 | -- | -- |
| 67.79 | 0.383 | 8.6 | -2.51 | 0.572 | -2.05 | -- | -4.69 | -0.0699 | 5.97 | 1.02 | 11311 | -- | -- |
| 74.45 | 0.402 | 8.48 | -1.65 | 0.567 | -1.43 | -- | -- | 0.205 | 6.69 | 2.546 | 11295 | -- | -- |
| 69.15 | 0.387 | 8.59 | -2.14 | -- | -2.43 | -- | -4.52 | 0.0615 | -- | 1.32 | 13863 | -- | -- |
| 129.15 | 0.533 | 8.55 | -1.78 | 0.709 | -- | 0.415 | -- | -0.175 | 7.84 | -- | -- | -- | -- |
| 129.59 | 0.533 | 8.55 | -1.77 | 0.712 | -- | -- | -- | -0.176 | 7.68 | -- | -- | -- | -- |
| 77 | 0.409 | 8.44 | -1.67 | -- | -1.77 | -- | -- | 0.325 | -- | 2.504 | 12386 | -- | -- |
| 98.23 | 0.462 | 8.49 | -- | 0.543 | -1.5 | -- | -- | 0.385 | 6.62 | 1.02 | 21474 | -- | -- |
| 156.89 | 0.585 | 8.57 | -1.76 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 212.54 | 0.682 | 8.51 | -- | 0.699 | -- | -- | -- | 0.0216 | 7.85 | -- | -- | -- | -- |
| 95.95 | 0.456 | 8.4 | -- | -- | -1.87 | -- | -- | 0.588 | -- | 0.17 | 47520 | -- | -- |
| 239.02 | 0.722 | 8.52 | -- | -- | -- | -- | -- | 0.0302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 2 | 59.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 3 | 59.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 4 | 59.95 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 5 | 60.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 7 | 60.02 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 12 | 60.06 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 16 | 60.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 60.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 20 | 60.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 40 | 60.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 52 | 60.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 64 | 60.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 68 | 60.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 71 | 60.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 73 | 60.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 74 | 60.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 97 | 60.61 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 136 | 60.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 137 | 60.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 190 | 61.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 200 | 61.33 | temperature | 20 | 43200 | > th | dose independent | sin | 21 | NA |
| 201 | 61.34 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 208 | 61.38 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 214 | 61.41 | temperature | 25 | 43200 | < th | dose dependent | sin | 22 | NA |
| 229 | 61.49 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 230 | 61.49 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 260 | 61.63 | temperature | 20 | 43200 | < th | dose independent | sin | 20 | NA |
| 314 | 61.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 321 | 61.74 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 322 | 61.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 341 | 61.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 362 | 61.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 363 | 61.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 371 | 61.88 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 388 | 61.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 396 | 61.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 397 | 61.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 401 | 61.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 419 | 61.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 432 | 62.01 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 441 | 62.03 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 443 | 62.03 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 448 | 62.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 455 | 62.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 479 | 62.09 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 497 | 62.11 | radiation | 1 | 14400 | > th | dose independent | sin | 8 | NA |
| 498 | 62.11 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 516 | 62.14 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 522 | 62.14 | humidity | 90 | 43200 | > th | dose dependent | sin | 22 | NA |
| 525 | 62.15 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 527 | 62.15 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 536 | 62.16 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 542 | 62.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 559 | 62.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 597 | 62.24 | radiation | 1 | 14400 | < th | dose independent | sin | 7 | NA |
| 773 | 62.40 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 848 | 62.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 852 | 62.46 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 857 | 62.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 914 | 62.56 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 921 | 62.57 | humidity | 90 | 43200 | > th | dose independent | sin | 21 | NA |
| 930 | 62.58 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 954 | 62.61 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 966 | 62.62 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 968 | 62.62 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 970 | 62.62 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 23 |