Os07g0485600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0485600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.62 | 0.303 | 9.79 | 0.0577 | 0.211 | 0.667 | 0.279 | -0.536 | -0.135 | 18.5 | 26.6 | 30 | -- | -- |
| 41.56 | 0.303 | 9.78 | 0.103 | 0.224 | 0.617 | 0.26 | -- | -0.128 | 18.6 | 26.51 | 23 | -- | -- |
| 41.69 | 0.303 | 9.78 | 0.0681 | 0.223 | 0.667 | -- | -0.338 | -0.132 | 18.8 | 26.6 | 30 | -- | -- |
| 41.72 | 0.303 | 9.78 | 0.0962 | 0.222 | 0.635 | -- | -- | -0.128 | 18.8 | 26.5 | 18 | -- | -- |
| 43.56 | 0.307 | 9.78 | 0.0533 | -- | 0.687 | -- | -0.183 | -0.155 | -- | 25.63 | 79 | -- | -- |
| 46.96 | 0.321 | 9.78 | 0.179 | 0.363 | -- | 0.494 | -- | -0.114 | 17 | -- | -- | -- | -- |
| 47.58 | 0.323 | 9.78 | 0.181 | 0.366 | -- | -- | -- | -0.111 | 16.9 | -- | -- | -- | -- |
| 43.57 | 0.307 | 9.78 | 0.0742 | -- | 0.668 | -- | -- | -0.151 | -- | 25.54 | 91 | -- | -- |
| 41.96 | 0.303 | 9.78 | -- | 0.217 | 0.658 | -- | -- | -0.139 | 18.9 | 26.5 | 18 | -- | -- |
| 54.64 | 0.345 | 9.77 | 0.167 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 48.44 | 0.326 | 9.78 | -- | 0.363 | -- | -- | -- | -0.131 | 17 | -- | -- | -- | -- |
| 43.71 | 0.308 | 9.78 | -- | -- | 0.677 | -- | -- | -0.161 | -- | 25.5 | 91 | -- | -- |
| 55.38 | 0.347 | 9.78 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.78 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 4 | 39.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 5 | 39.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 6 | 39.94 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 23 | 40.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 30 | 40.40 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 38 | 40.48 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 58 | 40.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 63 | 40.71 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 107 | 40.93 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 11 |
| 135 | 41.05 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 145 | 41.08 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 166 | 41.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 175 | 41.19 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 218 | 41.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 231 | 41.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 255 | 41.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 266 | 41.47 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 273 | 41.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 274 | 41.48 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 308 | 41.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 328 | 41.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 331 | 41.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 356 | 41.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 366 | 41.69 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 438 | 41.79 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 7 |
| 500 | 41.86 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 608 | 41.98 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 613 | 41.98 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 696 | 42.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 698 | 42.10 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 17 |
| 704 | 42.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 715 | 42.11 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 726 | 42.13 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 20 |
| 736 | 42.14 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 769 | 42.16 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 786 | 42.18 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 803 | 42.19 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 837 | 42.21 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 3 |