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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0485500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0299) R2 : 0.327
β1 : 1.06 (0.113) R2dD : 0.15 R2D : 0.0272
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.76 (0.132) R2dE : 0.33 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.0685) R2dN8 : 0.0204 R2N8 : -0.0538
σ : 0.546
deviance : 137.39
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.93
memory length : 563
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129 0.534 3.37 0.867 0.276 1.68 1.37 0.78 0.148 6.8 25.8 669 -- --
129.64 0.53 3.36 1 0.246 1.63 1.53 -- 0.176 6.9 26.28 641 -- --
132.71 0.537 3.39 0.74 0.284 1.73 -- 1.47 0.111 8.94 25.77 485 -- --
134.63 0.54 3.36 0.99 0.322 1.62 -- -- 0.167 11.4 27.48 386 -- --
135.07 0.541 3.39 0.792 -- 1.83 -- 1.41 0.15 -- 27.1 563 -- --
169.48 0.61 3.43 0.542 0.535 -- 1.38 -- -0.182 7.75 -- -- -- --
174.74 0.619 3.43 0.58 0.533 -- -- -- -0.183 8.17 -- -- -- --
137.39 0.546 3.36 1.06 -- 1.76 -- -- 0.2 -- 27.93 563 -- --
158.8 0.587 3.4 -- 0.342 1.33 -- -- -0.0322 11.1 30.6 366 -- --
190.41 0.645 3.44 0.584 -- -- -- -- -0.176 -- -- -- -- --
183.6 0.634 3.45 -- 0.537 -- -- -- -0.247 8.09 -- -- -- --
163.02 0.595 3.41 -- -- 1.43 -- -- -0.0302 -- 31.11 536 -- --
199.4 0.659 3.46 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.62 temperature 15 270 > th dose dependent sin 8 NA
2 126.62 temperature 25 270 < th dose dependent rect. 24 21
11 127.67 temperature 10 720 > th dose dependent rect. 16 17
16 128.37 temperature 15 720 > th dose dependent rect. 19 14
18 128.63 temperature 25 720 < th dose dependent rect. 16 20
20 128.66 temperature 30 270 < th dose dependent sin 7 NA
32 128.89 temperature 15 720 > th dose dependent sin 11 NA
46 129.03 temperature 25 720 < th dose dependent rect. 7 23
65 129.23 temperature 30 720 < th dose dependent sin 11 NA
80 129.34 temperature 25 720 < th dose dependent rect. 3 23
103 129.54 temperature 25 720 < th dose dependent no NA NA
111 129.62 temperature 25 720 < th dose dependent rect. 11 23
170 130.29 temperature 10 720 > th dose dependent rect. 21 7
273 131.65 temperature 10 720 > th dose dependent rect. 12 21
521 133.48 temperature 20 720 > th dose independent rect. 16 17
526 133.50 temperature 15 30 > th dose dependent rect. 6 23
532 133.53 temperature 15 720 > th dose dependent rect. 19 23
583 133.92 temperature 20 270 > th dose dependent rect. 23 10
612 134.08 temperature 10 720 > th dose dependent rect. 1 23
634 134.23 temperature 20 270 < th dose independent rect. 24 22
642 134.27 temperature 15 720 > th dose dependent no NA NA
654 134.33 temperature 20 720 > th dose independent rect. 6 22
685 134.49 temperature 15 720 > th dose dependent rect. 6 23
721 134.67 temperature 20 720 > th dose independent rect. 12 21
725 134.68 temperature 20 720 < th dose independent rect. 18 17
732 134.69 temperature 25 270 < th dose dependent rect. 1 10
761 134.85 temperature 15 1440 > th dose dependent rect. 24 12
772 134.88 temperature 10 1440 > th dose dependent rect. 3 6
774 134.88 temperature 30 1440 < th dose dependent rect. 3 6
779 134.90 temperature 30 1440 < th dose dependent rect. 1 11
917 135.23 temperature 20 720 > th dose independent sin 12 NA
945 135.27 temperature 30 1440 < th dose dependent sin 7 NA