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Os07g0481400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.82 (0.0237) R2 : 0.133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.417 (0.0499) R2dN8 : 0.172 R2N8 : 0.133
σ : 0.446
deviance : 91.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.76 0.341 8.85 0.669 0.617 -0.38 0.31 -1.43 0.405 0.201 63 942 -- --
55.43 0.347 8.84 0.715 0.629 -0.478 0.0799 -- 0.393 0.513 63 1051 -- --
52.97 0.339 8.85 0.65 0.618 -0.37 -- -1.29 0.401 0.482 63 1036 -- --
55.42 0.347 8.84 0.718 0.633 -0.48 -- -- 0.378 0.528 63.26 1051 -- --
74.3 0.401 8.83 0.664 -- -0.278 -- -1.02 0.422 -- 60 1771 -- --
62.39 0.37 8.81 0.633 0.532 -- -0.0157 -- 0.48 0.746 -- -- -- --
62.39 0.37 8.81 0.633 0.532 -- -- -- 0.48 0.746 -- -- -- --
63.34 0.372 8.8 0.688 -- -0.393 -- -- 0.487 -- 76.12 3180 -- --
63.78 0.372 8.84 -- 0.576 -0.75 -- -- 0.368 0.372 65 7635 -- --
80.09 0.418 8.8 0.652 -- -- -- -- 0.49 -- -- -- -- --
72.96 0.4 8.83 -- 0.542 -- -- -- 0.41 0.8 -- -- -- --
74.8 0.404 8.82 -- -- -0.394 -- -- 0.425 -- 75 7479 -- --
91.32 0.446 8.82 -- -- -- -- -- 0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.80 precipitation 0.1 43200 < th dose independent rect. 17 1
2 50.80 precipitation 0.1 43200 < th dose dependent rect. 17 1
3 51.03 precipitation 0.1 43200 > th dose independent rect. 17 1
4 51.08 precipitation 0.1 43200 > th dose dependent rect. 17 1
5 51.61 humidity 70.0 1440 > th dose independent rect. 17 1
9 51.83 precipitation 0.1 14400 > th dose dependent rect. 14 4
11 51.87 precipitation 0.1 14400 > th dose dependent rect. 11 7
26 52.07 precipitation 0.1 14400 > th dose dependent rect. 17 5
28 52.08 wind 9.0 1440 < th dose dependent rect. 3 3
34 52.13 humidity 50.0 14400 < th dose independent sin 11 NA
39 52.17 wind 1.0 1440 > th dose dependent rect. 3 3
42 52.19 wind 3.0 1440 < th dose independent rect. 3 3
50 52.27 humidity 50.0 14400 < th dose independent rect. 15 20
56 52.31 precipitation 0.1 14400 > th dose dependent rect. 14 8
66 52.40 humidity 50.0 14400 > th dose independent sin 12 NA
73 52.44 wind 3.0 1440 > th dose independent rect. 3 3
75 52.45 wind 9.0 43200 > th dose dependent rect. 20 1
77 52.48 precipitation 0.1 14400 > th dose dependent rect. 8 14
78 52.50 precipitation 0.1 14400 > th dose dependent rect. 10 12
81 52.51 humidity 50.0 14400 < th dose independent rect. 15 2
88 52.59 humidity 50.0 14400 > th dose independent rect. 15 20
105 52.66 humidity 60.0 14400 > th dose independent rect. 17 16
109 52.69 precipitation 0.1 43200 > th dose dependent rect. 19 2
132 52.72 precipitation 0.1 14400 > th dose dependent sin 20 NA
143 52.75 humidity 60.0 14400 < th dose dependent rect. 16 19
153 52.78 humidity 80.0 4320 < th dose dependent rect. 18 6
171 52.84 humidity 60.0 14400 < th dose dependent sin 11 NA
180 52.88 humidity 50.0 14400 > th dose independent rect. 15 2
193 52.90 precipitation 0.1 4320 > th dose dependent rect. 2 16
209 52.93 humidity 50.0 14400 > th dose independent rect. 15 9
212 52.94 humidity 50.0 14400 > th dose independent rect. 15 5
224 52.95 humidity 50.0 14400 > th dose independent rect. 15 11
225 52.95 humidity 50.0 14400 > th dose independent rect. 15 13
248 52.99 temperature 30.0 43200 < th dose independent rect. 19 14
268 53.04 temperature 30.0 43200 < th dose independent rect. 7 2
285 53.07 temperature 30.0 43200 > th dose independent rect. 8 1
295 53.07 temperature 30.0 43200 < th dose independent rect. 23 10
314 53.09 temperature 30.0 43200 > th dose dependent rect. 18 16
338 53.11 temperature 30.0 43200 < th dose independent rect. 3 6
381 53.18 temperature 30.0 43200 > th dose dependent rect. 8 1
430 53.25 wind 9.0 14400 > th dose dependent rect. 18 3
434 53.26 humidity 60.0 14400 > th dose independent rect. 17 1
450 53.31 humidity 60.0 1440 > th dose independent rect. 11 1
454 53.31 radiation 30.0 1440 > th dose independent rect. 16 17
469 53.34 humidity 60.0 1440 < th dose independent rect. 11 2
470 53.34 radiation 30.0 1440 > th dose independent rect. 7 2
483 53.34 humidity 70.0 1440 > th dose independent rect. 17 15
492 53.35 precipitation 0.1 14400 > th dose independent rect. 17 5
493 53.35 radiation 30.0 1440 < th dose independent rect. 5 6
496 53.35 temperature 30.0 720 < th dose independent rect. 14 8
502 53.35 radiation 30.0 1440 < th dose independent rect. 18 17
504 53.35 humidity 70.0 1440 > th dose dependent rect. 18 1
507 53.36 radiation 30.0 1440 < th dose independent rect. 7 4
509 53.36 precipitation 0.1 14400 < th dose independent rect. 17 5
511 53.36 radiation 30.0 1440 < th dose independent rect. 22 13
516 53.36 temperature 30.0 43200 > th dose dependent rect. 18 1
521 53.36 precipitation 0.1 14400 < th dose dependent rect. 17 5
547 53.37 humidity 60.0 14400 < th dose dependent rect. 15 4
569 53.40 radiation 30.0 1440 > th dose independent rect. 16 19
612 53.45 precipitation 0.1 14400 > th dose dependent rect. 20 22
626 53.47 humidity 70.0 1440 > th dose independent rect. 17 9
627 53.47 humidity 70.0 1440 > th dose independent rect. 17 11
731 53.54 humidity 70.0 14400 < th dose dependent rect. 17 1
770 53.58 radiation 30.0 1440 > th dose independent sin 11 NA
801 53.62 humidity 80.0 4320 < th dose independent rect. 18 4
852 53.68 wind 9.0 14400 < th dose independent rect. 20 2
861 53.69 radiation 30.0 1440 < th dose independent sin 10 NA
884 53.72 precipitation 0.1 14400 > th dose independent rect. 8 14
885 53.72 precipitation 0.1 14400 < th dose independent rect. 8 14
890 53.72 precipitation 0.1 14400 < th dose dependent rect. 8 14
898 53.74 precipitation 0.1 14400 > th dose independent rect. 10 12
899 53.74 precipitation 0.1 14400 < th dose independent rect. 10 12
902 53.74 precipitation 0.1 14400 < th dose dependent rect. 10 12
924 53.78 humidity 90.0 14400 > th dose independent rect. 21 1
927 53.78 temperature 30.0 720 > th dose independent rect. 14 19
931 53.79 temperature 30.0 720 > th dose independent rect. 14 5
933 53.79 temperature 30.0 720 < th dose independent rect. 15 6
963 53.83 humidity 70.0 1440 < th dose independent rect. 17 1
975 53.84 radiation 10.0 43200 > th dose independent rect. 12 1
994 53.87 wind 9.0 14400 > th dose independent rect. 18 3