Os07g0481300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os07g0481300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.56 | 0.48 | 7.85 | 1.47 | 1.3 | 1.08 | -0.18 | -0.168 | 0.687 | 23.2 | 77 | 783 | -- | -- |
| 104.59 | 0.476 | 7.85 | 1.46 | 1.3 | 1.08 | -0.128 | -- | 0.686 | 23.3 | 76.98 | 789 | -- | -- |
| 104.66 | 0.476 | 7.85 | 1.47 | 1.31 | 1.09 | -- | -0.0384 | 0.687 | 23.2 | 76.92 | 789 | -- | -- |
| 104.66 | 0.476 | 7.85 | 1.47 | 1.31 | 1.09 | -- | -- | 0.686 | 23.3 | 76.92 | 793 | -- | -- |
| 134.2 | 0.542 | 7.82 | 1.47 | -- | 0.657 | -- | -0.0554 | 0.668 | -- | 76.92 | 789 | -- | -- |
| 125.74 | 0.526 | 7.84 | 1.36 | 0.941 | -- | -0.174 | -- | 0.656 | 0.857 | -- | -- | -- | -- |
| 125.86 | 0.525 | 7.84 | 1.37 | 0.942 | -- | -- | -- | 0.657 | 0.843 | -- | -- | -- | -- |
| 134.22 | 0.542 | 7.82 | 1.46 | -- | 0.656 | -- | -- | 0.668 | -- | 76.92 | 793 | -- | -- |
| 155.47 | 0.581 | 7.88 | -- | 1.37 | 1.1 | -- | -- | 0.592 | 22.7 | 83.22 | 648 | -- | -- |
| 181.19 | 0.629 | 7.82 | 1.4 | -- | -- | -- | -- | 0.674 | -- | -- | -- | -- | -- |
| 175 | 0.619 | 7.87 | -- | 0.963 | -- | -- | -- | 0.505 | 0.906 | -- | -- | -- | -- |
| 187.05 | 0.639 | 7.86 | -- | -- | 0.636 | -- | -- | 0.512 | -- | 82 | 3112 | -- | -- |
| 232.9 | 0.712 | 7.86 | -- | -- | -- | -- | -- | 0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.93 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 103.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 6 | 104.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 19 | 104.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 24 | 104.91 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 22 |
| 25 | 104.96 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 40 | 105.21 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 41 | 105.25 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 22 |
| 51 | 105.34 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 78 | 105.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 79 | 105.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 92 | 105.86 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 118 | 106.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 121 | 106.13 | humidity | 80.0 | 720 | > th | dose independent | rect. | 6 | 23 |
| 124 | 106.16 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 137 | 106.25 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 141 | 106.30 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 142 | 106.31 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 143 | 106.31 | humidity | 80.0 | 720 | > th | dose independent | rect. | 4 | 23 |
| 145 | 106.32 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 150 | 106.33 | humidity | 80.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 152 | 106.33 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 161 | 106.40 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 182 | 106.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 183 | 106.54 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 18 |
| 186 | 106.54 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 23 |
| 192 | 106.58 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 200 | 106.61 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 245 | 106.89 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 273 | 107.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 296 | 107.19 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 324 | 107.39 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 332 | 107.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 334 | 107.48 | temperature | 20.0 | 720 | < th | dose independent | sin | 22 | NA |
| 369 | 107.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 372 | 107.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 389 | 107.76 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 410 | 107.88 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 421 | 107.97 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 435 | 108.05 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 455 | 108.12 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 461 | 108.14 | temperature | 20.0 | 720 | < th | dose independent | sin | 15 | NA |
| 469 | 108.18 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 488 | 108.27 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 489 | 108.28 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 491 | 108.29 | temperature | 20.0 | 720 | > th | dose independent | sin | 17 | NA |
| 500 | 108.31 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 535 | 108.43 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 543 | 108.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 15 |
| 546 | 108.45 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 595 | 108.59 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 612 | 108.64 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 630 | 108.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 641 | 108.73 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 643 | 108.74 | humidity | 80.0 | 720 | < th | dose independent | sin | 16 | NA |
| 682 | 108.84 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 685 | 108.85 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 742 | 108.99 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 754 | 109.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 760 | 109.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 779 | 109.05 | humidity | 80.0 | 720 | > th | dose independent | sin | 21 | NA |
| 816 | 109.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 820 | 109.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 826 | 109.12 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 867 | 109.23 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 878 | 109.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 884 | 109.28 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 914 | 109.36 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 916 | 109.36 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 923 | 109.37 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 925 | 109.37 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 964 | 109.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 988 | 109.51 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 997 | 109.53 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 13 |