Os07g0481000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pollen-specific kinase partner protein.
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Os07g0481000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pollen-specific kinase partner protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.33 | 0.212 | 9.71 | 1.02 | 0.362 | -0.371 | -0.0498 | 1.7 | 0.387 | 4.92 | 20.84 | 1618 | -- | -- |
| 22.76 | 0.222 | 9.76 | 0.634 | 0.375 | -0.381 | -0.132 | -- | 0.295 | 5.01 | 13.5 | 8963 | -- | -- |
| 20.33 | 0.21 | 9.71 | 1.02 | 0.361 | -0.371 | -- | 1.74 | 0.388 | 4.88 | 21.05 | 1628 | -- | -- |
| 22.69 | 0.222 | 9.76 | 0.617 | 0.375 | -0.376 | -- | -- | 0.294 | 4.89 | 10.8 | 9120 | -- | -- |
| 25.93 | 0.238 | 9.75 | 0.707 | -- | -0.53 | -- | 1.17 | 0.322 | -- | 21.05 | 1628 | -- | -- |
| 24.98 | 0.234 | 9.78 | 0.41 | 0.374 | -- | -0.07 | -- | 0.181 | 5.02 | -- | -- | -- | -- |
| 24.99 | 0.234 | 9.78 | 0.41 | 0.374 | -- | -- | -- | 0.182 | 5.02 | -- | -- | -- | -- |
| 27.23 | 0.244 | 9.77 | 0.511 | -- | -0.46 | -- | -- | 0.264 | -- | 21.05 | 1628 | -- | -- |
| 29.04 | 0.252 | 9.79 | -- | 0.342 | -0.192 | -- | -- | 0.159 | 5.37 | 10.8 | 9120 | -- | -- |
| 32.34 | 0.266 | 9.79 | 0.424 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 29.43 | 0.254 | 9.79 | -- | 0.381 | -- | -- | -- | 0.136 | 4.98 | -- | -- | -- | -- |
| 33.77 | 0.272 | 9.79 | -- | -- | -0.358 | -- | -- | 0.19 | -- | 22.4 | 1858 | -- | -- |
| 37.07 | 0.284 | 9.8 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 2 | 19.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 19.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 6 | 19.83 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 16 | 19.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 39 | 19.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 53 | 19.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 75 | 20.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 90 | 20.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 105 | 20.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 185 | 20.19 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 186 | 20.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 187 | 20.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 190 | 20.19 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 202 | 20.21 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 204 | 20.21 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 253 | 20.25 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 297 | 20.27 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 298 | 20.27 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 321 | 20.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 323 | 20.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 390 | 20.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 396 | 20.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 398 | 20.30 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 2 | NA |
| 410 | 20.30 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 443 | 20.31 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 446 | 20.31 | atmosphere | 995 | 43200 | > th | dose dependent | sin | 3 | NA |
| 451 | 20.31 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 0 | NA |
| 455 | 20.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 474 | 20.31 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 559 | 20.32 | atmosphere | 995 | 43200 | > th | dose dependent | sin | 1 | NA |
| 691 | 20.33 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 704 | 20.33 | atmosphere | 1015 | 43200 | < th | dose dependent | no | NA | NA |
| 706 | 20.33 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 707 | 20.33 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 857 | 20.34 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 863 | 20.34 | atmosphere | 995 | 43200 | > th | dose dependent | no | NA | NA |
| 865 | 20.34 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 20 | NA |
| 876 | 20.34 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 992 | 20.34 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 11 | 23 |