Os07g0478600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0478600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.51 | 0.395 | 12.3 | 1.25 | 0.165 | -1.54 | -0.0548 | 0.729 | 0.323 | 18.9 | 23.94 | 12 | -- | -- |
| 70.77 | 0.392 | 12.3 | 1.16 | 0.155 | -1.47 | -0.0587 | -- | 0.304 | 19.3 | 23.65 | 12 | -- | -- |
| 70.52 | 0.391 | 12.3 | 1.25 | 0.165 | -1.55 | -- | 0.726 | 0.323 | 18.9 | 23.95 | 12 | -- | -- |
| 70.78 | 0.392 | 12.3 | 1.16 | 0.156 | -1.48 | -- | -- | 0.304 | 19.2 | 23.67 | 12 | -- | -- |
| 71.76 | 0.395 | 12.3 | 1.23 | -- | -1.48 | -- | 0.561 | 0.327 | -- | 23.52 | 11 | -- | -- |
| 104.62 | 0.48 | 12.4 | 0.906 | 0.547 | -- | 0.256 | -- | 0.105 | 1.9 | -- | -- | -- | -- |
| 104.87 | 0.48 | 12.4 | 0.899 | 0.547 | -- | -- | -- | 0.104 | 1.85 | -- | -- | -- | -- |
| 71.92 | 0.395 | 12.3 | 1.16 | -- | -1.44 | -- | -- | 0.309 | -- | 23.25 | 9 | -- | -- |
| 103.47 | 0.474 | 12.3 | -- | 0.179 | -1.18 | -- | -- | 0.117 | 22.9 | 24.66 | 9 | -- | -- |
| 122.95 | 0.518 | 12.3 | 0.921 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 126.15 | 0.525 | 12.4 | -- | 0.563 | -- | -- | -- | 0.00393 | 1.9 | -- | -- | -- | -- |
| 104.87 | 0.477 | 12.3 | -- | -- | -1.28 | -- | -- | 0.109 | -- | 24.6 | 8 | -- | -- |
| 145.33 | 0.563 | 12.4 | -- | -- | -- | -- | -- | 0.0143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.20 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 2 | 65.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 7 | 65.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 8 | 66.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 11 | 66.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 12 | 66.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 14 | 66.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 28 | 67.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 41 | 67.51 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 89 | 68.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 157 | 69.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 166 | 69.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 213 | 70.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 220 | 70.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 249 | 70.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 320 | 70.78 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 353 | 70.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 371 | 71.04 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 377 | 71.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 412 | 71.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 488 | 71.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 489 | 71.47 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 539 | 71.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 575 | 71.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 629 | 71.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 671 | 72.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 782 | 72.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 788 | 72.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 900 | 73.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 905 | 73.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 922 | 73.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 971 | 73.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |