FiT-DB / Search/ Help/ Sample detail

Os07g0476900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin domain 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.3 (0.024) R2 : 0.836
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.8 (0.0587) R2dC : 0.818 R2C : 0.819
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.307 (0.0505) R2dN8 : 0.0172 R2N8 : 0.018
σ : 0.453
deviance : 93.66
__
_____
C
peak time of C : 14.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.69 0.414 15.3 -0.145 1.82 -1.01 0.64 0.61 -0.376 14.9 16.13 131 -- --
78.3 0.412 15.3 -0.145 1.8 -1.02 0.0486 -- -0.374 14.8 16.59 139 -- --
78.29 0.412 15.3 -0.107 1.83 -1.01 -- 0.304 -0.373 14.9 16.28 131 -- --
78.31 0.412 15.3 -0.144 1.81 -1.02 -- -- -0.373 14.8 16.61 139 -- --
99.2 0.464 15.3 -0.175 -- -2.33 -- -0.225 -0.371 -- 6.79 278 -- --
93.37 0.453 15.3 -0.0917 2.79 -- 0.153 -- -0.318 14.2 -- -- -- --
93.46 0.453 15.3 -0.0873 2.79 -- -- -- -0.317 14.2 -- -- -- --
98.18 0.461 15.3 -0.176 -- -2.35 -- -- -0.403 -- 7.02 264 -- --
78.85 0.414 15.3 -- 1.82 -1.01 -- -- -0.357 14.8 16.36 139 -- --
559.02 1.1 15.3 -0.205 -- -- -- -- -0.384 -- -- -- -- --
93.66 0.453 15.3 -- 2.8 -- -- -- -0.307 14.2 -- -- -- --
98.98 0.463 15.3 -- -- -2.35 -- -- -0.383 -- 7.24 264 -- --
560.13 1.1 15.3 -- -- -- -- -- -0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.18 radiation 10.0 270 < th dose independent rect. 17 2
2 66.36 radiation 20.0 270 < th dose independent rect. 16 14
3 66.48 temperature 20.0 270 > th dose independent rect. 17 2
4 66.58 humidity 50.0 270 > th dose dependent rect. 21 4
5 66.72 radiation 10.0 270 < th dose dependent rect. 17 2
6 66.83 wind 9.0 270 < th dose independent rect. 21 4
8 66.85 temperature 10.0 270 > th dose independent rect. 21 4
9 66.85 temperature 30.0 270 < th dose independent rect. 21 4
10 66.85 humidity 50.0 270 > th dose independent rect. 21 4
13 66.85 atmosphere 995.0 270 > th dose independent rect. 21 4
14 66.85 radiation 1.0 270 < th dose independent rect. 21 4
19 66.85 temperature 10.0 270 > th dose independent rect. 1 20
20 66.85 radiation 10.0 270 < th dose dependent rect. 21 4
26 66.95 radiation 10.0 270 < th dose dependent rect. 1 20
27 66.97 radiation 40.0 270 < th dose dependent rect. 16 14
28 67.03 humidity 50.0 270 > th dose independent rect. 17 2
29 67.08 precipitation 0.1 270 < th dose independent rect. 21 4
30 67.08 precipitation 0.1 270 < th dose dependent rect. 21 4
34 67.20 wind 9.0 270 < th dose independent rect. 1 20
37 67.36 wind 9.0 270 < th dose dependent rect. 21 4
40 67.47 precipitation 0.1 270 < th dose independent rect. 19 22
41 67.47 precipitation 0.1 270 < th dose dependent rect. 19 22
42 67.50 atmosphere 1015.0 270 < th dose independent rect. 1 20
43 67.60 precipitation 0.1 270 < th dose independent rect. 6 10
44 67.60 wind 9.0 270 < th dose independent rect. 16 14
45 67.60 precipitation 0.1 270 < th dose dependent rect. 6 10
48 67.67 wind 9.0 270 < th dose independent rect. 6 10
49 67.75 temperature 10.0 270 > th dose independent rect. 6 10
50 67.75 atmosphere 1015.0 270 < th dose independent rect. 6 10
51 67.75 temperature 10.0 270 > th dose independent rect. 16 14
54 67.76 wind 9.0 270 < th dose dependent rect. 17 2
57 67.93 humidity 50.0 90 > th dose dependent rect. 17 4
62 68.00 humidity 50.0 270 > th dose independent rect. 2 18
63 68.02 wind 9.0 270 < th dose independent rect. 17 2
66 68.07 temperature 10.0 270 > th dose dependent rect. 21 4
68 68.15 wind 9.0 270 < th dose independent rect. 20 6
69 68.18 temperature 10.0 270 > th dose independent rect. 17 2
71 68.18 atmosphere 1010.0 270 < th dose independent rect. 17 2
76 68.18 temperature 10.0 270 > th dose independent rect. 20 6
77 68.18 temperature 30.0 270 < th dose independent rect. 20 6
78 68.18 humidity 50.0 270 > th dose independent rect. 20 6
81 68.18 atmosphere 995.0 270 > th dose independent rect. 20 6
82 68.18 radiation 1.0 270 < th dose independent rect. 20 6
87 68.18 temperature 10.0 270 > th dose independent rect. 2 18
88 68.18 atmosphere 1015.0 270 < th dose independent rect. 2 18
89 68.18 radiation 10.0 270 < th dose independent rect. 1 19
90 68.18 temperature 10.0 270 > th dose independent rect. 19 22
91 68.18 humidity 50.0 270 > th dose dependent rect. 20 6
92 68.18 radiation 1.0 270 < th dose dependent rect. 20 6
99 68.21 wind 9.0 270 < th dose independent rect. 19 22
102 68.37 humidity 50.0 270 > th dose independent rect. 1 20
103 68.39 atmosphere 995.0 270 > th dose independent rect. 6 10
104 68.42 wind 9.0 270 < th dose independent rect. 2 18
108 68.50 precipitation 0.1 270 < th dose independent rect. 20 6
110 68.50 precipitation 0.1 270 < th dose dependent rect. 20 6
133 68.74 humidity 50.0 270 > th dose dependent rect. 17 2
142 68.83 precipitation 0.1 270 < th dose independent rect. 17 2
143 68.83 precipitation 0.1 270 < th dose dependent rect. 17 2
146 68.94 temperature 20.0 270 > th dose independent rect. 16 4
148 68.96 humidity 50.0 270 > th dose independent rect. 16 14
151 68.98 atmosphere 1015.0 270 < th dose independent rect. 21 4
152 68.98 wind 9.0 270 < th dose dependent rect. 20 6
162 69.17 radiation 40.0 270 < th dose independent rect. 1 20
166 69.23 humidity 60.0 10 > th dose dependent rect. 18 3
169 69.25 temperature 10.0 270 > th dose dependent rect. 17 2
170 69.30 wind 1.0 270 > th dose independent rect. 17 2
171 69.30 precipitation 0.1 270 < th dose independent rect. 1 20
172 69.30 atmosphere 995.0 270 > th dose dependent rect. 17 2
173 69.30 precipitation 0.1 270 < th dose dependent rect. 1 20
176 69.35 temperature 30.0 270 < th dose independent rect. 17 2
184 69.44 radiation 40.0 270 < th dose dependent rect. 15 5
188 69.54 atmosphere 995.0 270 > th dose independent rect. 17 2
191 69.60 atmosphere 995.0 270 > th dose independent rect. 19 22
203 69.78 humidity 50.0 270 > th dose independent rect. 15 5
209 69.87 temperature 30.0 90 < th dose independent rect. 17 4
228 70.08 wind 1.0 270 > th dose independent rect. 21 4
242 70.10 radiation 40.0 270 < th dose independent rect. 11 10
288 70.26 wind 9.0 270 < th dose independent rect. 20 20
290 70.27 humidity 70.0 90 > th dose independent rect. 17 4
292 70.30 precipitation 0.1 270 < th dose independent rect. 2 18
293 70.30 precipitation 0.1 270 < th dose dependent rect. 2 18
298 70.34 wind 1.0 270 > th dose independent rect. 6 10
305 70.37 wind 9.0 270 < th dose independent rect. 16 4
315 70.41 atmosphere 995.0 270 > th dose independent rect. 1 20
320 70.43 atmosphere 995.0 270 > th dose independent rect. 20 20
338 70.54 wind 5.0 90 < th dose independent rect. 17 4
341 70.56 atmosphere 1015.0 270 < th dose independent rect. 16 4
344 70.56 temperature 10.0 270 > th dose independent rect. 20 20
383 70.68 precipitation 0.1 270 < th dose independent rect. 20 20
385 70.68 precipitation 0.1 270 < th dose dependent rect. 20 20
395 70.70 wind 9.0 90 < th dose dependent rect. 17 4
404 70.75 radiation 1.0 270 > th dose independent rect. 6 10
405 70.75 wind 9.0 90 < th dose independent rect. 22 19
453 70.90 atmosphere 995.0 270 > th dose independent rect. 16 14
463 70.92 wind 1.0 90 > th dose independent rect. 17 5
464 70.92 atmosphere 995.0 90 > th dose independent rect. 22 19
476 70.97 humidity 60.0 10 > th dose independent rect. 18 14
510 71.03 atmosphere 995.0 270 > th dose independent rect. 2 18
521 71.05 temperature 10.0 90 > th dose independent rect. 22 19
525 71.07 precipitation 0.1 90 < th dose independent rect. 22 19
527 71.07 precipitation 0.1 90 < th dose dependent rect. 22 19
529 71.08 temperature 10.0 90 > th dose dependent rect. 17 5
538 71.14 atmosphere 1015.0 270 < th dose independent rect. 20 6
539 71.14 temperature 30.0 10 < th dose independent rect. 18 14
623 71.30 temperature 30.0 90 < th dose independent rect. 17 14
628 71.32 atmosphere 995.0 90 > th dose independent rect. 17 5
632 71.33 radiation 40.0 270 < th dose independent rect. 13 8
633 71.33 precipitation 0.1 270 < th dose independent rect. 16 14
636 71.33 precipitation 0.1 270 < th dose dependent rect. 16 14
669 71.41 wind 1.0 270 > th dose independent rect. 20 6
680 71.43 atmosphere 995.0 90 > th dose dependent rect. 17 5
692 71.47 temperature 30.0 10 < th dose independent rect. 18 5
693 71.47 radiation 1.0 10 < th dose dependent rect. 18 5
779 71.82 radiation 1.0 30 < th dose dependent rect. 13 10
781 71.82 radiation 20.0 90 < th dose dependent rect. 17 18
803 71.86 radiation 20.0 43200 < th dose dependent rect. 19 5
819 71.94 radiation 40.0 270 < th dose dependent rect. 11 9
824 71.95 radiation 1.0 1440 < th dose dependent rect. 19 5
826 71.96 precipitation 0.1 270 < th dose independent rect. 11 14
829 71.96 precipitation 0.1 270 < th dose dependent rect. 11 14
880 72.11 wind 9.0 10 < th dose independent rect. 23 19
894 72.17 precipitation 0.1 270 < th dose independent rect. 16 4
896 72.17 precipitation 0.1 270 < th dose dependent rect. 16 4
957 72.32 temperature 10.0 1440 > th dose independent rect. 19 5
960 72.32 temperature 30.0 1440 < th dose independent rect. 19 5
964 72.32 humidity 50.0 1440 > th dose independent rect. 19 5
966 72.32 atmosphere 995.0 1440 > th dose independent rect. 19 5
967 72.32 radiation 1.0 1440 < th dose independent rect. 19 5
988 72.32 temperature 10.0 1440 > th dose independent rect. 24 19