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Os07g0475400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Expansin-like protein A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.64 (0.0246) R2 : 0.632
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.16 (0.0631) R2dC : 0.289 R2C : 0.351
β3 : 1.6 (0.0901) R2dE : 0.281 R2E : 0.343
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.003 (0.0535) R2dN8 : 8.5e-05 R2N8 : 0.000642
σ : 0.457
deviance : 96.1
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C
peak time of C : 4.49
E
wheather : radiation
threshold : 1.02
memory length : 5280
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.73
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.75 0.43 9.6 -0.0505 1.29 1.68 0.148 2.06 0.0966 4.2 0.84 5273 7 --
91.24 0.445 9.59 -0.348 1.21 1.48 0.131 -- 0.142 4.48 1.03 5314 7.63 --
82.44 0.423 9.6 -0.0692 1.22 1.79 -- 2.18 0.0969 4.71 0.84 5276 7.79 --
88.81 0.439 9.64 -0.529 1.15 1.68 -- -- -0.00111 4.66 1.043 5293 8.16 --
133.67 0.538 9.59 -0.0387 -- 2.35 -- 3.3 0.138 -- 0.67 5437 10.3 --
144.82 0.564 9.57 -0.313 1.35 -- 0.476 -- 0.305 3.22 -- -- -- --
145.54 0.565 9.57 -0.322 1.35 -- -- -- 0.302 3.28 -- -- -- --
144.09 0.559 9.62 -0.558 -- 1.98 -- -- 0.00939 -- 1.047 5400 9.41 --
96.1 0.457 9.64 -- 1.16 1.6 -- -- 0.003 4.49 1.02 5280 7.73 --
248.66 0.737 9.57 -0.265 -- -- -- -- 0.337 -- -- -- -- --
148.27 0.57 9.57 -- 1.34 -- -- -- 0.338 3.28 -- -- -- --
150.38 0.571 9.65 -- -- 1.34 -- -- 0.261 -- -2.275e-06 6427 8.34 --
250.51 0.739 9.57 -- -- -- -- -- 0.367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.37 temperature 10.0 270 > th dose dependent rect. 15 15
3 93.09 radiation 1.0 270 < th dose dependent rect. 5 21
4 93.19 radiation 1.0 270 < th dose dependent rect. 8 18
8 94.61 temperature 10.0 270 > th dose dependent rect. 1 20
9 94.74 radiation 40.0 14400 < th dose dependent rect. 23 6
16 95.72 radiation 1.0 270 < th dose independent rect. 8 18
31 97.46 temperature 30.0 10 < th dose dependent rect. 8 20
40 97.86 temperature 30.0 90 < th dose dependent rect. 11 16
52 98.55 temperature 30.0 270 < th dose dependent rect. 9 17
56 98.65 temperature 10.0 270 > th dose dependent rect. 2 4
60 98.79 temperature 15.0 270 > th dose independent rect. 15 15
69 99.13 radiation 40.0 14400 > th dose dependent rect. 8 1
70 99.15 temperature 15.0 270 > th dose independent rect. 2 17
71 99.16 temperature 10.0 270 > th dose dependent rect. 1 6
72 99.18 radiation 1.0 14400 < th dose dependent rect. 18 13
73 99.18 radiation 40.0 14400 > th dose dependent rect. 15 18
74 99.19 radiation 1.0 14400 < th dose dependent rect. 18 17
103 99.37 temperature 10.0 90 > th dose dependent rect. 4 17
113 99.56 temperature 15.0 270 > th dose independent rect. 1 20
116 99.59 temperature 10.0 10 > th dose dependent rect. 4 18
118 99.61 radiation 1.0 14400 < th dose dependent rect. 18 1
130 99.77 temperature 15.0 10 > th dose dependent rect. 16 15
139 99.99 radiation 1.0 14400 < th dose dependent sin 10 NA
143 100.06 radiation 40.0 14400 < th dose independent rect. 8 1
157 100.23 radiation 30.0 14400 < th dose independent rect. 15 17
180 100.49 radiation 1.0 14400 < th dose dependent rect. 24 11
190 100.53 radiation 1.0 14400 < th dose dependent rect. 2 9
227 100.61 radiation 20.0 14400 < th dose independent rect. 16 15
241 100.64 radiation 40.0 270 < th dose independent rect. 15 15
253 100.67 radiation 1.0 43200 < th dose independent rect. 18 11
261 100.71 precipitation 0.1 270 < th dose independent rect. 15 15
263 100.71 precipitation 0.1 270 < th dose dependent rect. 15 15
264 100.72 radiation 40.0 14400 < th dose independent rect. 23 10
272 100.74 radiation 1.0 14400 < th dose dependent rect. 24 6
296 100.80 radiation 1.0 14400 < th dose dependent rect. 2 4
324 100.84 radiation 1.0 14400 < th dose dependent rect. 23 20
325 100.84 radiation 1.0 14400 < th dose dependent rect. 8 23
334 100.86 humidity 70.0 270 > th dose independent rect. 19 7
344 100.87 radiation 1.0 14400 < th dose dependent no NA NA
345 100.87 radiation 1.0 14400 < th dose dependent rect. 2 17
349 100.87 radiation 1.0 14400 < th dose dependent rect. 2 23
350 100.87 radiation 1.0 14400 < th dose dependent rect. 4 23
353 100.88 radiation 1.0 14400 < th dose dependent rect. 4 15
360 100.88 radiation 1.0 14400 < th dose dependent rect. 4 21
380 100.91 precipitation 0.1 270 < th dose independent rect. 1 6
381 100.91 precipitation 0.1 270 < th dose dependent rect. 1 6
387 100.93 wind 7.0 270 < th dose independent rect. 19 7
393 100.94 wind 9.0 270 < th dose independent rect. 6 9
402 100.96 temperature 10.0 270 > th dose independent rect. 6 9
403 100.96 atmosphere 1015.0 270 < th dose independent rect. 6 9
410 100.98 radiation 1.0 43200 > th dose independent rect. 18 11
416 100.99 precipitation 0.1 270 < th dose independent rect. 6 9
419 100.99 precipitation 0.1 270 < th dose dependent rect. 6 9
423 101.00 precipitation 0.1 270 < th dose independent rect. 2 4
424 101.00 precipitation 0.1 270 < th dose dependent rect. 2 4
472 101.15 precipitation 0.1 270 < th dose independent rect. 2 17
476 101.15 precipitation 0.1 270 < th dose dependent rect. 2 17
477 101.16 atmosphere 1005.0 43200 > th dose independent rect. 16 1
511 101.23 radiation 1.0 43200 < th dose independent rect. 18 1
537 101.34 atmosphere 1010.0 270 < th dose independent rect. 1 6
539 101.35 wind 9.0 270 < th dose independent rect. 15 15
542 101.35 radiation 1.0 14400 > th dose dependent rect. 17 13
552 101.41 atmosphere 1005.0 43200 < th dose independent rect. 16 1
572 101.45 radiation 20.0 270 < th dose dependent rect. 1 7
590 101.50 radiation 1.0 14400 < th dose independent rect. 18 18
591 101.50 radiation 1.0 14400 < th dose independent rect. 18 20
599 101.52 temperature 30.0 90 < th dose dependent rect. 21 6
604 101.55 temperature 30.0 270 < th dose dependent rect. 21 4
615 101.58 radiation 1.0 14400 < th dose independent rect. 18 15
618 101.59 radiation 1.0 14400 < th dose dependent rect. 8 11
625 101.61 radiation 1.0 43200 > th dose independent rect. 18 1
641 101.63 atmosphere 1010.0 270 < th dose independent rect. 2 4
642 101.63 atmosphere 1005.0 43200 < th dose independent rect. 16 5
643 101.63 radiation 30.0 14400 > th dose independent rect. 16 16
667 101.66 temperature 30.0 270 < th dose dependent rect. 19 7
686 101.70 radiation 10.0 270 < th dose independent rect. 2 4
742 101.80 radiation 1.0 14400 < th dose independent rect. 18 13
746 101.81 temperature 10.0 270 > th dose dependent rect. 13 8
766 101.86 temperature 10.0 270 > th dose independent rect. 19 7
767 101.86 temperature 30.0 270 < th dose independent rect. 19 7
768 101.86 humidity 50.0 270 > th dose independent rect. 19 7
769 101.86 atmosphere 995.0 270 > th dose independent rect. 19 7
770 101.86 radiation 1.0 270 < th dose independent rect. 19 7
776 101.86 atmosphere 1015.0 270 < th dose independent rect. 2 17
778 101.86 radiation 1.0 270 < th dose dependent rect. 19 7
787 101.87 radiation 10.0 270 < th dose independent rect. 1 6
790 101.88 radiation 20.0 14400 < th dose dependent rect. 2 4
824 101.95 wind 9.0 270 < th dose independent rect. 1 6
825 101.95 temperature 10.0 270 > th dose independent rect. 1 6
827 101.95 temperature 30.0 270 < th dose independent rect. 1 6
828 101.95 humidity 50.0 270 > th dose independent rect. 1 6
830 101.95 atmosphere 995.0 270 > th dose independent rect. 1 6
832 101.95 radiation 40.0 270 < th dose independent rect. 1 6
833 101.95 temperature 10.0 270 > th dose independent rect. 7 18
841 101.96 temperature 30.0 10 < th dose dependent rect. 18 10
844 101.97 atmosphere 995.0 270 > th dose independent rect. 6 9
855 102.00 radiation 20.0 14400 < th dose dependent rect. 4 2
862 102.03 temperature 10.0 270 > th dose dependent rect. 3 2
865 102.04 wind 9.0 270 < th dose independent rect. 7 18
878 102.09 wind 7.0 270 < th dose independent rect. 2 4
885 102.10 temperature 10.0 270 > th dose independent rect. 2 4
887 102.10 temperature 30.0 270 < th dose independent rect. 2 4
888 102.10 humidity 50.0 270 > th dose independent rect. 2 4
891 102.10 atmosphere 995.0 270 > th dose independent rect. 2 4
896 102.10 temperature 10.0 270 > th dose independent rect. 6 20
903 102.11 radiation 1.0 14400 > th dose dependent rect. 4 2
927 102.14 wind 9.0 270 < th dose dependent rect. 2 4
941 102.18 radiation 20.0 30 < th dose independent rect. 4 18
942 102.18 radiation 40.0 270 < th dose dependent rect. 2 4
948 102.19 humidity 50.0 270 > th dose dependent rect. 19 7
961 102.24 wind 9.0 270 < th dose independent rect. 6 20
966 102.26 radiation 1.0 14400 > th dose independent rect. 18 20
974 102.29 radiation 1.0 14400 > th dose independent rect. 18 18
978 102.30 wind 9.0 270 < th dose independent rect. 2 17
979 102.30 radiation 40.0 14400 > th dose independent rect. 15 18
981 102.31 temperature 30.0 10 < th dose dependent rect. 22 6