Os07g0474700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0474700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.34 | 0.515 | 7.3 | 0.731 | 0.538 | 1.57 | -1.39 | -0.96 | 0.176 | 12 | 25.11 | 117 | -- | -- |
| 121.59 | 0.514 | 7.32 | 0.597 | 0.541 | 1.68 | -1.21 | -- | 0.137 | 11.9 | 24.97 | 129 | -- | -- |
| 127.21 | 0.525 | 7.31 | 0.604 | 0.538 | 1.7 | -- | -0.146 | 0.17 | 12.2 | 25.13 | 131 | -- | -- |
| 126.76 | 0.524 | 7.32 | 0.548 | 0.575 | 1.69 | -- | -- | 0.16 | 12.8 | 25.37 | 126 | -- | -- |
| 142.27 | 0.556 | 7.35 | 0.597 | -- | 1.48 | -- | -0.398 | 0.0993 | -- | 24.7 | 301 | -- | -- |
| 160.72 | 0.594 | 7.4 | 0.183 | 0.315 | -- | -1.34 | -- | -0.182 | 10.3 | -- | -- | -- | -- |
| 167.81 | 0.607 | 7.4 | 0.132 | 0.322 | -- | -- | -- | -0.184 | 11 | -- | -- | -- | -- |
| 142.63 | 0.556 | 7.34 | 0.485 | -- | 1.44 | -- | -- | 0.0901 | -- | 24.8 | 302 | -- | -- |
| 133.88 | 0.539 | 7.34 | -- | 0.531 | 1.47 | -- | -- | 0.058 | 12.6 | 25.35 | 124 | -- | -- |
| 174.27 | 0.617 | 7.41 | 0.125 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 168.27 | 0.607 | 7.4 | -- | 0.321 | -- | -- | -- | -0.199 | 11 | -- | -- | -- | -- |
| 148.24 | 0.567 | 7.36 | -- | -- | 1.25 | -- | -- | 0.00651 | -- | 24.9 | 294 | -- | -- |
| 174.68 | 0.617 | 7.41 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 120.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 120.40 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 9 | 120.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 14 | 120.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 15 | 120.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 19 | 120.88 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 22 | 120.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 28 | 121.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 33 | 122.23 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 56 | 123.01 | temperature | 25 | 90 | < th | dose dependent | sin | 6 | NA |
| 68 | 123.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 84 | 123.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 142 | 124.49 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 208 | 125.69 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 242 | 126.39 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 14 |
| 287 | 127.15 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 299 | 127.33 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 365 | 128.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 387 | 128.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 452 | 129.63 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 22 |
| 453 | 129.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 456 | 129.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 492 | 130.17 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 494 | 130.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 527 | 130.41 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 811 | 132.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 876 | 132.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 897 | 132.64 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 917 | 132.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 960 | 133.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 961 | 133.03 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 985 | 133.13 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 22 |
| 992 | 133.17 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 20 |