Os07g0474300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0474300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.28 | 0.62 | 2.11 | 4.53 | 0.286 | -68.1 | -0.658 | 417 | 0.0853 | 6.63 | 994.7 | 663 | -- | -- |
| 1779.59 | 1.96 | 2.61 | -0.38 | 0.812 | -39 | -0.429 | -- | 0.314 | 13.7 | 994.5 | 105 | -- | -- |
| 174.91 | 0.616 | 2.12 | 4.46 | 0.298 | -68.3 | -- | 418 | 0.0859 | 5.8 | 994.6 | 671 | -- | -- |
| 195.43 | 0.651 | 2.84 | 0.00882 | 0.0283 | -0.316 | -- | -- | 0.207 | 11.6 | 994.5 | 230 | -- | -- |
| 179.41 | 0.624 | 2.12 | 4.51 | -- | -68.8 | -- | 421 | 0.0919 | -- | 994.5 | 679 | -- | -- |
| 188.58 | 0.644 | 2.87 | -0.0408 | 0.307 | -- | -0.54 | -- | 0.0748 | 6.25 | -- | -- | -- | -- |
| 189.02 | 0.644 | 2.87 | -0.0492 | 0.313 | -- | -- | -- | 0.0756 | 5.43 | -- | -- | -- | -- |
| 193.99 | 0.649 | 2.88 | -0.0373 | -- | -0.268 | -- | -- | 0.0814 | -- | 995.5 | 211 | -- | -- |
| 188.39 | 0.639 | 2.86 | -- | 0.294 | 0.337 | -- | -- | 0.0922 | 5.62 | 997.2 | 50 | -- | -- |
| 194.11 | 0.651 | 2.88 | -0.0388 | -- | -- | -- | -- | 0.0833 | -- | -- | -- | -- | -- |
| 189.08 | 0.643 | 2.87 | -- | 0.312 | -- | -- | -- | 0.0811 | 5.44 | -- | -- | -- | -- |
| 193.55 | 0.648 | 2.87 | -- | -- | 0.366 | -- | -- | 0.0964 | -- | 997.3 | 55 | -- | -- |
| 194.15 | 0.65 | 2.87 | -- | -- | -- | -- | -- | 0.0876 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 173.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 3 | 174.09 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 10 | 174.09 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 17 | 174.12 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 58 | 174.12 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 99 | 174.14 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 1 |
| 111 | 174.44 | wind | 1 | 90 | > th | dose independent | rect. | 9 | 23 |
| 119 | 174.97 | atmosphere | 995 | 720 | > th | dose independent | sin | 6 | NA |
| 120 | 175.11 | atmosphere | 995 | 720 | < th | dose independent | sin | 6 | NA |
| 130 | 175.77 | atmosphere | 995 | 720 | > th | dose independent | sin | 3 | NA |
| 135 | 175.92 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 145 | 176.38 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 5 | 5 |
| 171 | 177.14 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 1 |
| 175 | 177.20 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 177 | 177.43 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 199 | 177.79 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 8 | 1 |
| 204 | 178.04 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 246 | 178.09 | atmosphere | 995 | 720 | > th | dose independent | sin | 23 | NA |
| 268 | 178.43 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 5 |
| 269 | 178.44 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 1 |
| 271 | 178.46 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 275 | 178.47 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 8 | 2 |
| 276 | 178.48 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 277 | 178.49 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 278 | 178.49 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 279 | 178.50 | temperature | 15 | 720 | < th | dose independent | rect. | 23 | 1 |
| 292 | 178.50 | temperature | 15 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 306 | 178.51 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 345 | 178.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 371 | 178.84 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 396 | 179.05 | wind | 1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 408 | 179.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 428 | 179.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 431 | 179.31 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 623 | 179.33 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 655 | 179.47 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 1 |
| 656 | 179.48 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 12 |
| 659 | 179.50 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 661 | 179.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 10 |
| 686 | 179.57 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 690 | 179.59 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 889 | 179.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 915 | 179.69 | wind | 1 | 10 | > th | dose independent | rect. | 10 | 22 |
| 919 | 179.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 14 |
| 920 | 179.73 | radiation | 20 | 10 | < th | dose independent | rect. | 8 | 3 |
| 924 | 179.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 5 | 1 |
| 926 | 179.78 | wind | 1 | 90 | > th | dose independent | rect. | 3 | 14 |
| 930 | 179.80 | humidity | 70 | 90 | > th | dose independent | rect. | 8 | 1 |