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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0472900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.93 (0.0278) R2 : 0.446
β1 : 0.791 (0.102) R2dD : 0.076 R2D : 0.0774
β2 : 1.13 (0.0688) R2dC : 0.332 R2C : 0.321
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.262 (0.0594) R2dN8 : 0.0317 R2N8 : 0.0454
σ : 0.523
deviance : 124.78
__
_____
C
peak time of C : 14.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.3 0.496 4.53 2.91 1.12 -12.9 0.453 76.3 -0.249 14.8 999.6 1007 -- --
124.04 0.523 4.94 0.788 1.13 -0.108 0.436 -- -0.268 14.8 999.6 1007 -- --
111.82 0.493 4.54 2.88 1.14 -13 -- 77.2 -0.245 14.8 999.5 1006 -- --
118.32 0.507 4.93 0.729 1.13 0.668 -- -- -0.22 14.9 1000 2645 -- --
184.93 0.633 4.53 2.95 -- -13.1 -- 77.1 -0.274 -- 999.7 978 -- --
124.13 0.522 4.94 0.78 1.13 -- 0.435 -- -0.265 14.8 -- -- -- --
124.78 0.523 4.93 0.791 1.13 -- -- -- -0.262 14.8 -- -- -- --
191.69 0.645 4.93 0.691 -- 0.719 -- -- -0.246 -- 1000 2699 -- --
132.27 0.536 4.94 -- 1.11 0.796 -- -- -0.293 14.8 1001 2586 -- --
199.3 0.66 4.94 0.742 -- -- -- -- -0.291 -- -- -- -- --
141.26 0.556 4.95 -- 1.12 -- -- -- -0.35 14.8 -- -- -- --
199.64 0.658 4.94 -- -- 0.884 -- -- -0.29 -- 999.2 9420 -- --
213.83 0.683 4.96 -- -- -- -- -- -0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.35 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
6 108.46 atmosphere 1000.0 1440 > th dose independent rect. 8 1
21 108.83 atmosphere 1000.0 1440 > th dose independent rect. 7 4
23 108.86 atmosphere 1000.0 1440 < th dose independent rect. 8 1
199 110.85 wind 7.0 43200 > th dose dependent rect. 18 2
262 111.89 humidity 90.0 4320 > th dose independent rect. 21 1
269 112.05 wind 9.0 43200 > th dose dependent rect. 18 4
285 112.35 wind 7.0 43200 > th dose independent rect. 18 1
308 112.70 humidity 90.0 4320 < th dose independent rect. 21 1
320 112.89 wind 9.0 43200 > th dose independent rect. 18 3
324 112.92 temperature 15.0 270 > th dose dependent rect. 17 21
330 113.02 wind 7.0 43200 < th dose independent rect. 18 1
333 113.05 wind 9.0 43200 > th dose dependent rect. 18 12
340 113.11 atmosphere 1000.0 1440 < th dose independent sin 7 NA
347 113.26 precipitation 0.1 14400 > th dose dependent rect. 20 2
349 113.29 radiation 1.0 14400 < th dose dependent rect. 20 5
354 113.34 wind 9.0 43200 < th dose independent rect. 18 3
365 113.45 wind 9.0 4320 > th dose dependent rect. 17 13
366 113.46 temperature 15.0 270 > th dose dependent rect. 2 11
368 113.48 atmosphere 1000.0 1440 > th dose independent sin 7 NA
380 113.59 temperature 20.0 10 > th dose dependent rect. 19 21
381 113.64 precipitation 0.1 720 > th dose independent rect. 16 2
389 113.69 precipitation 0.1 14400 > th dose dependent rect. 20 6
391 113.73 wind 9.0 43200 > th dose dependent rect. 18 7
392 113.76 atmosphere 1005.0 14400 > th dose independent rect. 5 1
437 114.00 wind 7.0 43200 > th dose independent rect. 20 1
438 114.00 atmosphere 1000.0 1440 < th dose dependent sin 8 NA
445 114.04 atmosphere 1005.0 14400 < th dose independent rect. 5 1
446 114.05 temperature 15.0 720 > th dose dependent rect. 2 3
451 114.06 atmosphere 1000.0 720 < th dose dependent rect. 6 9
457 114.09 precipitation 0.1 720 > th dose dependent rect. 15 3
462 114.11 precipitation 0.1 4320 > th dose dependent rect. 17 1
464 114.11 atmosphere 1000.0 720 < th dose dependent rect. 5 11
467 114.14 radiation 1.0 1440 < th dose dependent rect. 17 3
469 114.14 radiation 1.0 1440 < th dose dependent rect. 17 12
478 114.17 atmosphere 1005.0 14400 < th dose independent rect. 3 3
479 114.17 atmosphere 1000.0 720 < th dose dependent rect. 1 15
489 114.20 radiation 1.0 1440 < th dose dependent rect. 17 7
501 114.25 wind 9.0 43200 > th dose independent rect. 18 12
505 114.26 precipitation 0.1 1440 < th dose independent rect. 17 1
507 114.26 precipitation 0.1 1440 < th dose dependent rect. 17 1
536 114.37 wind 9.0 43200 > th dose independent rect. 18 7
548 114.42 precipitation 0.1 4320 > th dose dependent rect. 14 4
569 114.47 atmosphere 1000.0 720 < th dose dependent sin 3 NA
570 114.47 wind 9.0 4320 > th dose dependent rect. 17 6
571 114.47 wind 9.0 4320 > th dose dependent rect. 17 9
589 114.53 atmosphere 1000.0 4320 < th dose independent rect. 19 1
591 114.53 atmosphere 995.0 14400 > th dose independent rect. 7 6
594 114.54 atmosphere 1000.0 4320 > th dose independent rect. 19 1
603 114.56 atmosphere 1005.0 14400 > th dose independent rect. 2 11
628 114.61 humidity 90.0 4320 > th dose dependent rect. 21 1
635 114.63 wind 9.0 4320 > th dose dependent rect. 17 1
642 114.65 wind 7.0 43200 < th dose independent rect. 20 1
666 114.70 atmosphere 1005.0 14400 < th dose independent rect. 2 12
667 114.70 temperature 25.0 90 > th dose independent rect. 19 20
677 114.72 atmosphere 1005.0 14400 < th dose independent rect. 23 8
680 114.72 atmosphere 1005.0 14400 > th dose independent rect. 22 15
710 114.76 atmosphere 1005.0 14400 < th dose independent rect. 22 16
716 114.77 atmosphere 1005.0 14400 > th dose independent rect. 23 8
723 114.78 atmosphere 1005.0 14400 > th dose independent sin 5 NA
748 114.80 temperature 25.0 90 > th dose independent rect. 3 12
777 114.84 atmosphere 1005.0 14400 < th dose independent sin 5 NA
846 114.90 wind 9.0 43200 < th dose independent rect. 18 7
854 114.91 radiation 1.0 1440 < th dose independent rect. 17 3
859 114.91 wind 9.0 4320 > th dose independent rect. 17 12
863 114.91 radiation 1.0 14400 < th dose dependent rect. 24 1
871 114.92 precipitation 0.1 720 > th dose dependent rect. 9 9
899 114.95 wind 9.0 4320 > th dose dependent sin 11 NA
920 114.98 radiation 1.0 1440 < th dose independent rect. 17 7
939 115.00 radiation 1.0 1440 < th dose independent rect. 17 11
946 115.00 precipitation 0.1 720 > th dose dependent rect. 6 12
960 115.02 temperature 20.0 10 > th dose dependent rect. 3 13
964 115.03 wind 9.0 43200 < th dose independent rect. 18 12