Os07g0472400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0472400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.27 | 0.326 | 8.63 | 0.391 | 0.72 | -1.09 | -0.587 | -1.08 | -0.0461 | 6.87 | 24.9 | 717 | -- | -- |
| 48.97 | 0.326 | 8.64 | 0.214 | 0.937 | -1.16 | -0.623 | -- | -0.0514 | 6.45 | 35.99 | 515 | -- | -- |
| 49.08 | 0.326 | 8.63 | 0.391 | 0.721 | -1.11 | -- | -1.24 | -0.0481 | 6.95 | 24.99 | 710 | -- | -- |
| 49.89 | 0.329 | 8.64 | 0.202 | 0.943 | -1.18 | -- | -- | -0.0535 | 6.41 | 46 | 496 | -- | -- |
| 68.93 | 0.387 | 8.65 | 0.399 | -- | -1.12 | -- | -1.05 | -0.0403 | -- | 25.8 | 1352 | -- | -- |
| 64.18 | 0.376 | 8.61 | 0.481 | 0.628 | -- | -0.835 | -- | 0.12 | 6.27 | -- | -- | -- | -- |
| 65.9 | 0.38 | 8.61 | 0.471 | 0.624 | -- | -- | -- | 0.123 | 6.29 | -- | -- | -- | -- |
| 69.65 | 0.389 | 8.66 | 0.179 | -- | -0.978 | -- | -- | -0.0433 | -- | 49.37 | 1354 | -- | -- |
| 50.85 | 0.332 | 8.65 | -- | 0.966 | -1.27 | -- | -- | -0.0872 | 6.46 | 54.99 | 516 | -- | -- |
| 86.1 | 0.434 | 8.62 | 0.488 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 71.76 | 0.396 | 8.62 | -- | 0.63 | -- | -- | -- | 0.0702 | 6.25 | -- | -- | -- | -- |
| 70.35 | 0.391 | 8.67 | -- | -- | -1.05 | -- | -- | -0.0822 | -- | 33.01 | 1358 | -- | -- |
| 92.38 | 0.449 | 8.63 | -- | -- | -- | -- | -- | 0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 45.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 5 | 45.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 7 | 45.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 13 | 46.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 18 | 46.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 19 | 46.28 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 38 | 46.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 46 | 46.59 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 68 | 46.81 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 72 | 46.85 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 19 |
| 76 | 46.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 100 | 47.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 124 | 47.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 158 | 47.32 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 167 | 47.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 191 | 47.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 250 | 47.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 314 | 47.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 315 | 47.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 333 | 47.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 335 | 47.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 402 | 47.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 485 | 47.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 704 | 48.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 893 | 48.28 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 952 | 48.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 984 | 48.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |