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Os07g0471000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0193) R2 : 0.00567
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0657 (0.0407) R2dN8 : 0.00732 R2N8 : 0.00567
σ : 0.364
deviance : 60.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.5 0.303 10.9 0.212 0.234 -0.217 -2.4 -1.69 -0.042 11.6 0.7513 98 -- --
42.95 0.305 10.9 0.112 0.172 -0.278 -0.562 -- -0.0715 11.7 4.144 68 -- --
43.72 0.308 10.9 0.0919 0.355 -0.134 -- 0.312 -0.0614 12.2 5.002 62 -- --
44.08 0.309 10.9 0.0901 0.189 -0.263 -- -- -0.0682 12.6 3.575 64 -- --
43.74 0.308 10.9 0.0912 -- -0.405 -- 0.346 -0.0796 -- 4.437 64 -- --
44.17 0.312 10.9 0.118 0.494 -- -0.498 -- -0.0466 12.2 -- -- -- --
45.22 0.315 10.9 0.0993 0.497 -- -- -- -0.0485 12.4 -- -- -- --
44.44 0.31 10.9 0.0898 -- -0.401 -- -- -0.0782 -- 3.809 68 -- --
44.28 0.31 10.9 -- 0.181 -0.269 -- -- -0.0734 12.7 2.18 61 -- --
60.73 0.364 10.9 0.0824 -- -- -- -- -0.0565 -- -- -- -- --
45.48 0.315 10.9 -- 0.495 -- -- -- -0.0595 12.4 -- -- -- --
44.63 0.311 10.9 -- -- -0.397 -- -- -0.0814 -- 2.32 62 -- --
60.91 0.364 10.9 -- -- -- -- -- -0.0657 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.98 temperature 30.0 270 < th dose independent rect. 14 21
2 38.04 temperature 30.0 270 < th dose independent rect. 15 19
5 38.58 temperature 25.0 10 > th dose dependent rect. 18 10
6 38.61 temperature 25.0 10 > th dose dependent rect. 18 8
9 38.64 atmosphere 1005.0 270 > th dose dependent rect. 16 3
10 38.65 atmosphere 1005.0 270 > th dose dependent rect. 15 5
14 38.72 temperature 25.0 90 > th dose dependent rect. 17 15
16 38.78 humidity 50.0 270 > th dose independent rect. 14 21
18 38.81 temperature 25.0 30 > th dose dependent rect. 18 12
23 38.90 humidity 50.0 270 > th dose independent rect. 15 19
27 38.95 temperature 30.0 270 < th dose independent rect. 16 3
29 38.96 temperature 30.0 270 < th dose independent rect. 6 13
30 38.98 temperature 30.0 270 < th dose independent rect. 15 5
32 38.99 atmosphere 1005.0 270 > th dose dependent rect. 18 1
34 39.01 temperature 10.0 10 > th dose dependent rect. 12 15
44 39.08 temperature 30.0 720 < th dose independent rect. 24 10
50 39.14 humidity 70.0 720 > th dose independent rect. 19 12
58 39.21 atmosphere 1015.0 10 < th dose dependent rect. 12 14
66 39.27 temperature 10.0 1440 > th dose independent rect. 13 6
70 39.27 temperature 10.0 1440 > th dose independent rect. 19 18
73 39.27 atmosphere 995.0 1440 > th dose independent rect. 19 18
75 39.31 temperature 10.0 30 > th dose dependent rect. 12 6
77 39.34 humidity 50.0 270 > th dose independent rect. 6 13
85 39.43 atmosphere 995.0 270 > th dose dependent rect. 15 6
89 39.46 atmosphere 1005.0 270 > th dose independent rect. 16 3
90 39.46 atmosphere 1005.0 10 > th dose dependent rect. 16 7
92 39.48 precipitation 0.1 30 < th dose independent rect. 18 18
93 39.48 precipitation 0.1 30 < th dose dependent rect. 18 18
100 39.51 radiation 1.0 30 > th dose independent rect. 12 7
113 39.52 temperature 30.0 720 < th dose independent rect. 8 2
119 39.54 radiation 1.0 14400 < th dose dependent rect. 19 1
123 39.56 humidity 70.0 10 > th dose independent rect. 18 3
126 39.57 temperature 25.0 90 > th dose dependent sin 11 NA
129 39.58 temperature 25.0 30 > th dose independent rect. 18 6
130 39.58 precipitation 0.1 30 < th dose independent rect. 12 6
133 39.58 atmosphere 1005.0 10 > th dose dependent rect. 18 3
134 39.58 precipitation 0.1 30 < th dose dependent rect. 12 6
135 39.59 temperature 30.0 720 < th dose independent rect. 7 4
136 39.59 atmosphere 995.0 90 > th dose independent rect. 17 19
138 39.60 humidity 70.0 90 > th dose independent rect. 18 1
139 39.60 atmosphere 1005.0 270 > th dose independent rect. 15 5
147 39.61 atmosphere 995.0 270 > th dose independent rect. 15 19
150 39.63 precipitation 0.1 90 < th dose independent rect. 2 10
151 39.63 atmosphere 995.0 10 > th dose independent rect. 18 18
152 39.63 precipitation 0.1 90 < th dose dependent rect. 2 10
154 39.64 temperature 10.0 30 > th dose independent rect. 12 6
156 39.64 atmosphere 1015.0 30 < th dose independent rect. 12 6
157 39.64 wind 9.0 30 < th dose independent rect. 18 18
158 39.64 temperature 10.0 30 > th dose independent rect. 18 18
172 39.66 precipitation 0.1 10 < th dose independent rect. 3 9
175 39.66 atmosphere 1005.0 10 > th dose dependent rect. 18 5
176 39.66 precipitation 0.1 10 < th dose dependent rect. 3 9
177 39.67 wind 9.0 30 < th dose independent rect. 12 6
182 39.68 temperature 25.0 30 > th dose independent rect. 18 10
186 39.69 atmosphere 995.0 270 > th dose independent rect. 14 22
187 39.69 temperature 10.0 270 > th dose dependent rect. 12 2
195 39.71 wind 1.0 10 > th dose independent rect. 12 6
202 39.72 temperature 25.0 30 > th dose independent rect. 18 8
242 39.78 temperature 15.0 270 > th dose independent rect. 10 5
245 39.78 temperature 20.0 90 > th dose independent rect. 12 14
249 39.79 wind 1.0 270 > th dose independent rect. 12 2
251 39.80 temperature 30.0 90 < th dose independent rect. 18 1
253 39.80 temperature 10.0 90 > th dose independent rect. 2 10
254 39.80 atmosphere 995.0 90 > th dose independent rect. 2 10
255 39.80 atmosphere 1015.0 90 < th dose independent rect. 2 10
256 39.80 temperature 10.0 90 > th dose independent rect. 12 14
268 39.83 atmosphere 995.0 270 > th dose independent rect. 6 14
272 39.84 temperature 20.0 270 > th dose independent rect. 12 2
275 39.84 humidity 60.0 90 > th dose dependent rect. 18 1
278 39.85 humidity 70.0 720 > th dose independent rect. 19 3
282 39.85 wind 9.0 90 < th dose independent rect. 2 10
285 39.85 temperature 10.0 270 > th dose dependent rect. 10 5
288 39.86 temperature 30.0 720 > th dose independent rect. 11 3
289 39.86 atmosphere 995.0 14400 > th dose independent rect. 18 3
290 39.86 humidity 70.0 720 > th dose independent rect. 19 5
291 39.86 humidity 60.0 270 > th dose independent rect. 15 6
293 39.86 temperature 20.0 10 > th dose independent rect. 12 15
297 39.87 temperature 10.0 270 > th dose independent rect. 12 2
299 39.87 atmosphere 995.0 270 > th dose independent rect. 12 2
300 39.87 atmosphere 1015.0 270 < th dose independent rect. 12 2
303 39.87 atmosphere 1015.0 270 < th dose independent rect. 10 5
304 39.87 precipitation 0.1 270 < th dose independent rect. 10 5
306 39.87 temperature 10.0 270 > th dose independent rect. 15 19
307 39.87 temperature 10.0 270 > th dose independent rect. 14 22
309 39.87 precipitation 0.1 270 < th dose dependent rect. 10 5
312 39.88 temperature 20.0 720 > th dose independent rect. 21 1
313 39.88 wind 9.0 270 < th dose independent rect. 12 2
314 39.88 precipitation 0.1 270 < th dose independent rect. 12 2
315 39.88 wind 9.0 270 < th dose independent rect. 10 5
318 39.88 precipitation 0.1 270 < th dose dependent rect. 12 2
330 39.89 temperature 10.0 10 > th dose independent rect. 3 9
332 39.89 atmosphere 995.0 10 > th dose independent rect. 3 9
333 39.89 atmosphere 1015.0 10 < th dose independent rect. 3 9
335 39.89 temperature 10.0 10 > th dose independent rect. 12 15
344 39.90 precipitation 0.1 270 < th dose independent rect. 15 19
345 39.90 temperature 30.0 270 < th dose independent rect. 24 21
348 39.90 precipitation 0.1 270 < th dose dependent rect. 15 19
349 39.91 temperature 30.0 720 > th dose independent rect. 13 1
363 39.91 atmosphere 1015.0 90 < th dose dependent rect. 12 5
364 39.91 radiation 20.0 270 < th dose dependent rect. 20 11
385 39.93 humidity 50.0 90 > th dose independent rect. 2 10
403 39.94 wind 9.0 90 < th dose independent rect. 12 14
443 39.97 precipitation 0.1 270 < th dose independent rect. 14 22
448 39.97 precipitation 0.1 270 < th dose dependent rect. 14 22
466 39.99 precipitation 0.1 90 < th dose independent rect. 12 14
468 39.99 wind 9.0 270 < th dose independent rect. 14 22
472 39.99 precipitation 0.1 90 < th dose dependent rect. 12 14
486 40.01 wind 9.0 10 < th dose independent rect. 12 15
487 40.01 atmosphere 1015.0 30 < th dose independent rect. 18 18
497 40.02 temperature 10.0 1440 > th dose independent rect. 3 10
500 40.02 atmosphere 995.0 1440 > th dose independent rect. 3 10
502 40.02 temperature 10.0 1440 > th dose independent rect. 13 14
517 40.03 atmosphere 995.0 270 > th dose independent rect. 10 5
519 40.03 radiation 10.0 270 < th dose independent rect. 19 11
521 40.03 temperature 25.0 10 > th dose dependent rect. 18 3
535 40.04 humidity 80.0 30 < th dose dependent rect. 18 1
546 40.05 precipitation 0.1 10 < th dose independent rect. 12 15
551 40.05 precipitation 0.1 10 < th dose dependent rect. 12 15
578 40.09 atmosphere 995.0 10 > th dose independent rect. 19 23
589 40.10 temperature 10.0 270 > th dose independent rect. 20 10
590 40.10 temperature 30.0 270 < th dose independent rect. 20 10
594 40.10 atmosphere 995.0 270 > th dose independent rect. 20 10
599 40.10 temperature 10.0 270 > th dose independent rect. 6 14
600 40.10 atmosphere 1015.0 270 < th dose independent rect. 6 14
605 40.11 humidity 90.0 270 < th dose independent rect. 12 2
607 40.11 humidity 90.0 10 < th dose independent rect. 12 6
615 40.12 temperature 20.0 720 > th dose independent rect. 12 10
630 40.13 humidity 50.0 270 > th dose independent rect. 12 2
648 40.14 wind 1.0 90 > th dose independent rect. 4 13
661 40.15 temperature 30.0 720 < th dose independent rect. 23 15
670 40.16 precipitation 0.1 270 < th dose independent rect. 19 11
674 40.16 atmosphere 1015.0 270 < th dose dependent rect. 12 2
677 40.16 precipitation 0.1 270 < th dose dependent rect. 19 11
681 40.17 wind 9.0 270 < th dose independent rect. 20 10
724 40.21 wind 9.0 30 < th dose dependent rect. 12 6
728 40.22 humidity 50.0 270 > th dose independent rect. 10 5
737 40.23 atmosphere 995.0 14400 > th dose independent rect. 8 5
746 40.24 humidity 80.0 10 < th dose independent rect. 18 1
752 40.24 humidity 50.0 30 > th dose dependent rect. 18 3
761 40.25 radiation 1.0 30 < th dose dependent rect. 17 4
767 40.25 temperature 15.0 10 > th dose dependent rect. 12 21
789 40.27 radiation 1.0 270 > th dose independent rect. 12 2
795 40.27 temperature 30.0 720 < th dose independent rect. 18 14
800 40.27 radiation 1.0 1440 < th dose dependent rect. 19 3
806 40.28 precipitation 0.1 270 < th dose independent rect. 6 14
809 40.28 precipitation 0.1 270 < th dose dependent rect. 6 14
811 40.29 wind 9.0 4320 < th dose independent rect. 17 4
812 40.29 wind 9.0 4320 < th dose independent rect. 17 11
831 40.30 atmosphere 1015.0 10 < th dose dependent rect. 12 21
832 40.31 temperature 20.0 10 > th dose independent rect. 18 1
841 40.32 temperature 10.0 1440 > th dose independent rect. 19 3
844 40.32 temperature 30.0 1440 < th dose independent rect. 19 3
848 40.32 humidity 50.0 1440 > th dose independent rect. 19 3
850 40.32 atmosphere 995.0 1440 > th dose independent rect. 19 3
851 40.32 radiation 1.0 1440 < th dose independent rect. 19 3
875 40.32 wind 9.0 270 < th dose independent rect. 6 14
877 40.32 temperature 10.0 1440 > th dose independent rect. 22 21
899 40.33 atmosphere 1015.0 10 < th dose dependent rect. 18 1
975 40.36 temperature 10.0 10 > th dose dependent rect. 18 1
978 40.36 radiation 40.0 43200 < th dose dependent rect. 19 3
987 40.37 wind 1.0 10 > th dose dependent rect. 18 1
998 40.38 wind 3.0 10 > th dose independent rect. 18 1