Os07g0470900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0470900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.84 | 0.492 | 2.98 | 0.497 | 0.388 | -0.925 | -0.762 | 2.74 | 0.219 | 15.3 | 20.17 | 234 | -- | -- |
| 114.73 | 0.499 | 3.04 | -0.00233 | 0.362 | -0.73 | -0.184 | -- | 0.0681 | 14.5 | 20.16 | 194 | -- | -- |
| 111.26 | 0.491 | 2.98 | 0.438 | 0.407 | -0.946 | -- | 2.47 | 0.223 | 16 | 20.17 | 269 | -- | -- |
| 114.46 | 0.498 | 3.05 | -0.0364 | 0.379 | -0.767 | -- | -- | 0.0629 | 15.7 | 20.34 | 221 | -- | -- |
| 113.36 | 0.496 | 3 | 0.369 | -- | -0.753 | -- | 1.87 | 0.155 | -- | 14.8 | 961 | -- | -- |
| 123.76 | 0.522 | 3.07 | -0.192 | 0.103 | -- | -0.405 | -- | -0.0614 | 11.9 | -- | -- | -- | -- |
| 124.43 | 0.522 | 3.07 | -0.207 | 0.109 | -- | -- | -- | -0.0625 | 13 | -- | -- | -- | -- |
| 116.3 | 0.502 | 3.05 | 0.00149 | -- | -0.732 | -- | -- | 0.0597 | -- | 14.13 | 1039 | -- | -- |
| 114.43 | 0.498 | 3.05 | -- | 0.383 | -0.785 | -- | -- | 0.0747 | 15.4 | 20.3 | 207 | -- | -- |
| 125.17 | 0.523 | 3.07 | -0.211 | -- | -- | -- | -- | -0.0646 | -- | -- | -- | -- | -- |
| 125.56 | 0.524 | 3.07 | -- | 0.112 | -- | -- | -- | -0.0394 | 13.1 | -- | -- | -- | -- |
| 116.3 | 0.502 | 3.05 | -- | -- | -0.728 | -- | -- | 0.0589 | -- | 14.5 | 1039 | -- | -- |
| 126.34 | 0.525 | 3.07 | -- | -- | -- | -- | -- | -0.0411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 2 | 105.77 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 2 |
| 8 | 106.22 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 21 | 106.59 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 25 | 106.62 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 41 | 106.77 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 42 | 106.77 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 50 | 106.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 51 | 106.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 52 | 106.96 | temperature | 15.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 86 | 107.32 | temperature | 15.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 96 | 107.39 | temperature | 30.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 100 | 107.43 | temperature | 30.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 107 | 107.46 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 125 | 107.55 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 138 | 107.67 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 2 |
| 172 | 107.88 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 185 | 107.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 258 | 108.25 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 422 | 108.88 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 10 |
| 514 | 109.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 561 | 109.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 619 | 109.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 9 |
| 633 | 109.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 663 | 109.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 786 | 109.79 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 800 | 109.84 | temperature | 20.0 | 720 | > th | dose independent | sin | 3 | NA |
| 849 | 109.91 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 866 | 109.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 880 | 109.99 | temperature | 20.0 | 720 | < th | dose independent | sin | 3 | NA |